Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 seq2 84.2 5e-11 >seq4 Length=4180124 Score = 129 bits (142), Expect = 1e-24 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 230414 AGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | || ||| |||| |||||| | ||||||||||||||| || ||| Sbjct 54783 AGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGC-TCATTGGCATGAACGCTACCCTCATG 54725 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | |||||||| || || || |||||||| | | || || || || ||||||| || Sbjct 54724 TGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGAAACGAGAAGATG 54665 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||||||| |||||||| | ||||||||| | || ||||| || || ||| ||||| Sbjct 54664 TACAACTCTACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAAC 54605 Query 230593 TTCTTCGA 230600 |||||||| Sbjct 54604 TTCTTCGA 54597 >seq2 Length=4873547 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| | |||||||| |||||||| || |||||| | | || || || || ||| ||| Sbjct 436540 ATGTGCCAGTACATGGAATTCGTCGCGGACCGCCTCGTCGTCGCGCTCGGCTACAGCAAA 436481 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 | ||| || | |||||||| | | ||||||||||| ||||| || || ||| || Sbjct 436480 ATCTACCACGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGGCC 436421 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||| ||||| ||| ||||| | || |||| Sbjct 436420 AACTTTTTCGAGTCGCGCGTCAGCGCGTACCAGA 436387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823769592710