Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 >seq4 Length=4180124 Score = 123 bits (136), Expect = 3e-23 Identities = 177/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 54863 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAG 54922 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 ||||||||| || |||||||| || ||||| || || || || || ||||| || ||||| Sbjct 54923 TCCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAA 54982 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATG 24310 || || || || || ||||||||||| || | || | || | ||| ||| Sbjct 54983 GATACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGACGAGCTCTCGTCCGA 55042 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| ||||||| ||||||||||| || | || || || ||||| || || || Sbjct 55043 GATCCAGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTT 55102 Query 24371 AAAGAGATA 24379 ||||| || Sbjct 55103 GAAGAGGTA 55111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721473834160