Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 208 9e-49 >seq3 Length=4554691 Score = 208 bits (230), Expect = 9e-49 Identities = 253/342 (74%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||||||||| || |||| || | ||| | | | ||| || |||| |||| | || Sbjct 2526039 CGGGTTCCAAGCACTGAGCACAATCCTGCGGTCCGTGGGATTATTCTTAATCTTGTCAAT 2526098 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 || ||| |||||||||||||||||||||| ||||| | | || ||| |||||| Sbjct 2526099 CACCTCCGCGAGCTGGTCCACGCCCTGCCCCGCATAATCCGCGTCGGCATCCTTGTACGC 2526158 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTC-CCCGGGCTCCCTGT 146104 |||||||| || | ||||||||| ||||| |||||||||| || ||| || | || Sbjct 2526159 TGCCCCGAAATGGCGCCACTGGAAGCCGTACACGGGCCCCAAATCGCCCTCGCGGCG-GT 2526217 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 ||||||||||| || | |||| | || ||| ||||||| || ||||||| || |||| Sbjct 2526218 GCCCCAGCCCGACCTTGTCGAGATACTCGCGGCTCCCGTTGCCGGCCCAGATGTTCACGC 2526277 Query 146165 CCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGA 146224 || | |||| ||||| | ||||||| | ||| || |||||||||||||| |||| Sbjct 2526278 CCTTGGCGGCGAGCTTGGCGCCGTCCGTGCATCCCGAGACAAACCAGAGCAGCTCCTCGA 2526337 Query 146225 GGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| || | | ||| ||||||||||||| |||||| |||| Sbjct 2526338 TGACGCCGCGCGTGAACACCCTCTTGGTGGACAGCAGCGGGA 2526379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076674608680