Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 206 3e-48 seq2 134 1e-26 seq1 122 9e-23 >seq4 Length=4180124 Score = 206 bits (228), Expect = 3e-48 Identities = 343/488 (70%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| ||||| || || ||| |||| |||||||||| ||||| || |||||| Sbjct 55105 TTCAAGGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGG 55046 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | | | ||||| || ||| || |||||||| | ||||| || ||||| ||||| Sbjct 55045 ATCTCGGAC-GAGAGCTCGTCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGG 54987 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||| ||||| |||||| | || || ||||||||||| || || |||||||| Sbjct 54986 TATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGCC 54927 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| || || ||| ||||||||||||||| | ||||||||||| || ||||||||| Sbjct 54926 CGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 54867 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCG-CGTCAGGG---AGA 117242 |||| | || |||| || | | || || | | | || | ||| | ||| Sbjct 54866 CTGTCTCCTCTTCACACACCT----CCGCCGTCGTCCCCACCCCGACCTCATTGACAAGA 54811 Query 117243 TCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC 117302 || ||| || || ||| || |||||| ||||||||||| || || || ||| | Sbjct 54810 TCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGC 54751 Query 117303 TGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 | | || | || || | | |||| || ||||| ||||| ||||||||| | ||| Sbjct 54750 TCATTGGCATGAA-CGCTACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTG 54692 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAAC 117421 || ||| || | || ||| |||||| | ||||||| | ||||||||| | Sbjct 54691 CTCGTCGCCCTCGGAAACGAGAAGATGTACAACTCTACCAACCCCTTCGACTTTATGGAG 54632 Query 117422 CTCATCTC 117429 | ||||| Sbjct 54631 ATGATCTC 54624 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || || || | || Sbjct 22757 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 22816 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| |||||||||||| ||||||| Sbjct 22817 GACACCATTGACAACG-TCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 22875 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| || || ||||| || |||| ||||||||| |||||||| Sbjct 22876 GCAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAA 22935 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 22936 CATCCAGAAGGAGTCCACTCTTCACCTTGT 22965 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| ||||| | | Sbjct 22529 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCG 22588 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 22589 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 22647 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 22648 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 22707 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 22708 CATTCAGAAGGAGTCGACCCTTCACCTGGT 22737 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || |||||||| | || ||||| | |||||| | | |||| | || Sbjct 23052 CTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGTCCGACACTATCGACAACGTT-AA 23110 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||| ||| | |||||||| || || |||| || || Sbjct 23111 GGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGG 23170 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || || | || ||| | |||||||||||||||||||||| | ||||| Sbjct 23171 CAAGCAGCTCGAGGATGGACGTACCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCT 23230 Query 40890 GCATCTAGT 40898 || || || Sbjct 23231 TCACCTTGT 23239 >seq2 Length=4873547 Score = 134 bits (148), Expect = 1e-26 Identities = 162/216 (75%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||||||| | || ||| | |||| |||| ||| || ||| ||| Sbjct 436913 AAGGCCGACTGGGCGCTGAAATACATTACCGAC-GAGATGCCG--TTCCGCACGCGTCTG 436857 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 | || || ||| ||||||||| |||||||||| ||| || || || || || ||| Sbjct 436856 ATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTCTGG 436797 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||| ||||| || |||| || ||||| ||||| |||||||||||||| | | Sbjct 436796 CTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCA--AACGAGCTCATCTCGCGCG 436739 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||| |||| ||||||||| || ||||||| Sbjct 436738 ACGAGGGCATGCACACCGACTTTGCGTGCTTGCTGT 436703 >seq1 Length=5948321 Score = 122 bits (134), Expect = 9e-23 Identities = 136/179 (76%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 4244002 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 4244061 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 4244062 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 4244120 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| || ||||||| ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 4244121 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 4244179 Score = 114 bits (126), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCA 40760 || || || ||||||||||| ||||||||| |||| || || | | |||| | | | Sbjct 3541565 GTTAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 3541624 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| || ||||| Sbjct 3541625 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 3541683 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 3541684 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 3541730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920