Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5 253 4e-62 seq4 118 2e-21 >seq5 Length=3690501 Score = 253 bits (280), Expect = 4e-62 Identities = 670/1010 (66%), Gaps = 30/1010 (3%) Strand=Plus/Minus Query 248734 ATGGTCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCG 248793 ||| || |||| || ||| ||| ||| | || |||| | ||| |||||||| || Sbjct 3210968 ATGATCTCCGAGGAGGTCTACAAGGTCGCCCTGGCCAACAAGGACCGTCTGGACGGTGCC 3210909 Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 || ||||| | || || | ||| | | ||||| ||||| || || ||| ||| Sbjct 3210908 ATCATCTACGACCGTGACTTTGCCTACAACTACTTTGGCTTCAAGACCCTTGAGCGTTCG 3210849 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || |||||| || | |||||| ||| || || ||||||||| | ||||| || Sbjct 3210848 TACCTCCTCCGCATCGGCGGCAAGGTCGCCGAGCGTCCCCAGCACATGATTATGCGTGTC 3210789 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 | |||| || ||| || |||| || | || | ||||| |||| | ||| Sbjct 3210788 TCGATCGGTATCCACGGCGAGAACATTGAAAAGGTCATTGAGACCTACAACCTCATGTCG 3210729 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAG 249033 || || | | || || ||| | || || |||||||||||||||||| | || ||| Sbjct 3210728 GAGCGTTACTTTACCCACGCCTCGCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAG 3210669 Query 249034 CTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACG 249093 || |||||||| || | |||||| | ||||||||| | |||||||| || ||||| Sbjct 3210668 ATGTCGTCGTGCTTCCTCGTCGCCATGAAGGACGACTCTATTGACGGCATCTACGACACT 3210609 Query 249094 CTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 || || || | || |||| || || || ||||| ||||||||| | || ||| Sbjct 3210608 CTCAAGACCTGC-GCCCAGATCTCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAA 3210550 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACC 249212 ||| || || ||||| |||||||| || || || || | | | |||||||| || Sbjct 3210549 CATTCGTGCCAAGGGCTCGTACATTGCCGGCACCAACGGCTACTCTAACGGTATCGTCCC 3210490 Query 249213 CCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCG 249266 | | || || || || | || || | | | || |||||| || ||||| Sbjct 3210489 CATGCTCCGTGCCTACGACGCTACTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGCC- 3210431 Query 249267 AAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGA 249326 || | || ||||| || | || |||||||||||| | || || ||||| || Sbjct 3210430 --CCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGATGTCTTCGACTTCCTCGA 3210373 Query 249327 CTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTG 249386 | | |||||| ||||||| ||| | | || |||||||||||||||| ||| || Sbjct 3210372 CCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTCTTCTACGCCCTCTG 3210313 Query 249387 GGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT-TTCTC 249445 | |||| ||| | |||||| | || ||| |||| ||||| || ||||| || | | | | Sbjct 3210312 GATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTGACGGTGACTGGACCCTCATGTGCCC 3210253 Query 249446 CGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAG 249504 || | | ||||||| |||| ||| | ||| | || || | | || || || | Sbjct 3210252 CGCCGAATGCCCCGG-CCTCTCCGACGTCCACTCTGAGGAGTTTG---AGGCTCTCTACG 3210197 Query 249505 AAA--TACGAATCCAACGGCA---TCGGCAAGACAATCAAGGCTCGGACCCT---TTTTG 249556 ||| ||||| | |||| | ||||||| |||||||||| || || |||| Sbjct 3210196 AAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACTATCAAGGCTCAGAAGCTCTGGTTTG 3210137 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCG 249615 | | | | ||| |||||| ||||| || || || | | || | | ||| ||||| Sbjct 3210136 CCA---TTCTCGAGGCCCAGACTGAGACTGGTGGCCCCT-TCATGCTCTACAAGGACGCT 3210081 Query 249616 TGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCA 249675 |||| |||| ||||| | ||| || || |||||| ||||| || ||||| | Sbjct 3210080 GCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAACCTCTGCACT 3210021 Query 249676 GAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| | || | ||||| || || ||| |||||||||||||||| || Sbjct 3210020 GAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCCGTCTGCAACCTTGC 3209971 >seq4 Length=4180124 Score = 118 bits (130), Expect = 2e-21 Identities = 178/252 (71%), Gaps = 21/252 (8%) Strand=Plus/Minus Query 254099 GCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGAT 254158 ||| ||||||||||||||||| || ||||| ||||| | ||| || ||||| ||||| Sbjct 1227064 GCGAGTGCTCGAGCTGAACGCCTCGGACGAGCGCGGCATCAGCGTGGTGCGCGAGAAGAT 1227005 Query 254159 CAAGACTTTCTC---CAAGATGTCG----ATTTCGTCGT-TCCAACC-CGGC-------- 254201 |||||| || | | ||| | || | ||| ||| |||| | |||| Sbjct 1227004 CAAGACGTTTGCGCGCGAGACGCCGCGCAACGTCGGCGTGTCCAGCGACGGCAAGACATA 1226945 Query 254202 ----TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGC 254257 || ||||| | ||||||| | ||||| || ||||| ||| | ||||| ||||| Sbjct 1226944 CCCCTGCCCGCCGTACAAGCTCATCATCCTTGATGAGGCCGACTCGATGACTCAGGACGC 1226885 Query 254258 GCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGT 254317 ||| |||||||||||||| ||||||||| |||| | |||||||| || || || Sbjct 1226884 CCAGAGCGCCCTCCGCCGAATCATGGAGACGTACTCGCGCATCACGCGTTTCTGTCTCGT 1226825 Query 254318 GTGCAACTACGT 254329 ||||||||| || Sbjct 1226824 GTGCAACTATGT 1226813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766166120256