Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 369 3e-97 seq4 140 3e-28 seq1 104 2e-17 seq2 100 3e-16 >seq5 Length=3690501 Score = 369 bits (408), Expect = 3e-97 Identities = 655/949 (69%), Gaps = 10/949 (1%) Strand=Plus/Plus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || ||| ||||||||||| ||||| ||||| |||||||| || | |||||| | ||| Sbjct 3209958 GAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAAT 3210017 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGAT 23135 || || || || ||| |||| || ||||| | | ||| ||||||| || || | Sbjct 3210018 CTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTTGGACTTGCGGT 3210076 Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 || | ||||||||||||||| | || || ||||| ||| | ||||| || | Sbjct 3210077 TGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGG 3210136 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTT 23254 | ||| | ||||||| | | | ||| || ||| ||| || |||||||||| Sbjct 3210137 CAAACCAGAGCTTCTGAGCCTTGATA-GTCTTGCGGCCCTTGCCCTCACGCTCGTACTTT 3210195 Query 23255 TGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 | ||| | || ||||| || || || ||||| |||||||| ||| || Sbjct 3210196 TCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAGGCCGGGGCATTCGGCGGGG 3210255 Query 23315 CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374 |||||||| |||| |||| || || || ||||| || || |||| ||||| Sbjct 3210256 CACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAG 3210315 Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434 || |||||||| || || |||||||| |||||||| |||||| |||||| | || Sbjct 3210316 AGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCG 3210375 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 | ||||| || || || || ||||| ||||||||||| | |||||| || || || | | Sbjct 3210376 AGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGC 3210435 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || || || ||||| ||||||||||| || || || ||| | | ||||| || ||| Sbjct 3210436 TTGTTACCACCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACG 3210495 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGA 23614 | |||||| || |||| ||| || | ||| || || || |||| |||||| Sbjct 3210496 ATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAATGTTGTGG 3210555 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 | ||||| ||| || || ||| | | || || ||| ||||| || ||||||||| Sbjct 3210556 ATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCG 3210615 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 |||||||| || || ||| || || | ||||| | ||| ||||| ||||| || | Sbjct 3210616 TAGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGG 3210675 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATT 23794 | ||| ||| |||| ||| || || || |||||| |||||||| | | |||||| Sbjct 3210676 TGGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATG 3210735 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 || ||||| || || ||| | ||||||| ||| ||||| |||||||| | ||| ||| Sbjct 3210736 AGGTTGTAGGTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGC 3210795 Query 23855 ATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 || ||||||| || || | || ||||| || ||||| || || || || ||| Sbjct 3210796 ATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGCCG---ATGCGGAGGAGGTACGAA 3210852 Query 23912 CGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || | | || || || ||||| |||| ||| ||||||||| |||| Sbjct 3210853 CGCTCAAGGGTCTTGAAGCCAAAGTAGTTGTAGGCAAAGTCACGGTCGT 3210901 >seq4 Length=4180124 Score = 140 bits (154), Expect = 3e-28 Identities = 290/430 (67%), Gaps = 4/430 (1%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 ||||| ||| | || || || || || ||||| || ||||| ||||| ||||| || Sbjct 55024 TTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCGTTC 54965 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| | ||||| || || || |||||||| || || || ||||||| Sbjct 54964 GCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCTCCAACGAG 54905 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || ||||| |||||||||||||| || || ||||| || || | | | | ||| | Sbjct 54904 CTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCACACACCTC 54845 Query 58143 GTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202 | | || | || | ||| | || |||| ||||| ||| ||| || Sbjct 54844 CGCCGTCGTCCCCACCCCGACCTCATTGACAAGATCATCAAGGAGGCTGTCAAGATTGAG 54785 Query 58203 AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATG 58262 | ||||| ||||||| || || || ||| | | | || |||||| | | ||| Sbjct 54784 CAGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGCTCATTGGCATGAACGCTACCCTCATG 54725 Query 58263 TCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTC 58320 | |||||||||||||||| |||||| | || | ||| || || |||| | Sbjct 54724 TGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGAAACGAGAAGAT- 54666 Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380 |||||| | | || || || || |||||| | ||||||||||| |||||||| | | Sbjct 54665 -GTACAACTCTACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCA 54607 Query 58381 ACTTTTTCGA 58390 |||| ||||| Sbjct 54606 ACTTCTTCGA 54597 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || ||| |||| || || | || Sbjct 22529 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCG 22588 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 22589 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 22648 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || || || | ||| || ||| Sbjct 22649 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 22708 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| ||||| ||||| || Sbjct 22709 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCT 22740 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || ||||| | ||| Sbjct 22757 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 22816 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || || |||||| Sbjct 22817 GACACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 22876 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || ||| || | || || ||| Sbjct 22877 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAAC 22936 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| || || ||| | || | || |||| Sbjct 22937 ATCCAGAAGGAGTCCACTCTTCACCTTGTCCTTCGTCTTCGTGGTGGTA 22985 >seq1 Length=5948321 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 4244001 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 4244060 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||||||||| ||| | || || ||||| Sbjct 4244061 GGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 4244120 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || ||||| ||||| ||| | || ||| Sbjct 4244121 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 4244157 >seq2 Length=4873547 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || ||||| || ||||| || || |||||||| ||| |||||||| || || Sbjct 436859 CTGATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTC 436800 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||| || ||||| ||| |||||| | || |||||| Sbjct 436799 TGGCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGC 436740 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 |||||||| | || || || ||||||||| | |||| Sbjct 436739 GACGAGGGCATGCACACCGACTTTGCGTGCTTGCTGTA 436702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640