Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 100 6e-16 seq5 87.8 4e-12 >seq4 Length=4180124 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||||||||| ||||| || |||||||| || | ||||| || || |||||| Sbjct 55008 TTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGC 54949 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 ||||||| | || | |||| || ||||||| |||||| ||| |||| || | |||| Sbjct 54948 TCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACG 54889 Query 102039 AAGGTCTTCATCGCGACTTTGCATG 102063 | ||||| || ||||||||| || Sbjct 54888 AGGGTCTCCACACCGACTTTGCCTG 54864 >seq5 Length=3690501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 94779 GTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTC-CTTAAGAGTATCAT 94837 ||||| |||| || || |||||||||||||| | | ||| ||| ||||| || | Sbjct 3210558 GTGGAGACCGATACCGCCGGCAGTCTTGGAGATC-TGGGCGCAGGTCTTGAGAGTGTCGT 3210616 Query 94838 AAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTG 94897 | || || ||||| || || | | | | | ||||||||||| || | ||||| Sbjct 3210617 AGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGT 3210676 Query 94898 TGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGA 94957 | || || || || || || || || || |||||||| || || |||||||| Sbjct 3210677 GGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGA 3210736 Query 94958 GATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCA 95017 | | || || |||||||| || |||| ||||| || |||| | ||||||| Sbjct 3210737 GGTTGTAGGTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCA 3210796 Query 95018 TAATCATGTCCTGAGGGCGCTC 95039 ||||||||| ||| || ||||| Sbjct 3210797 TAATCATGTGCTGGGGACGCTC 3210818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583784456235