Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3 152 4e-32 >seq3 Length=4554691 Score = 152 bits (168), Expect = 4e-32 Identities = 205/282 (73%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 21237 AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAA 21296 ||||||||||| ||||| ||| | || | |||||||| || ||||| | ||||| ||| Sbjct 2526109 AGCTGGTCCACGCCCTGCCCCGCATAATCCGCGTCGGCATCCTTGTACGCTGCCCCGAAA 2526168 Query 21297 TGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCC 21356 || | ||||||||| |||||||| ||||||| ||||||||||||||||| ||| ||||| Sbjct 2526169 TGGCGCCACTGGAAGCCGTACACGGGCCCCAAATCGCCCTCGCGGCGGTGCCC-CAGCCC 2526227 Query 21357 TGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC----GCGGC 21411 | | | | | | ||||| ||||| || |||| || || ||||| ||||| Sbjct 2526228 GACCTTGTCGAGATACTCGCGGCTCCCGTTGCCGGCCCAGATGTTCACGCCCTTGGCGGC 2526287 Query 21412 GCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGC 21471 | || | || | ||| ||| | ||| || |||||| |||| |||||| | ||||| Sbjct 2526288 G----AGCTTGGCGCCGTCCGTGCATCCCGAGACAAACCAGAGCAGCTCCTCGATGACGC 2526343 Query 21472 CCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 | | | |||||||| ||||||| | ||| || | | ||| Sbjct 2526344 CGCGCGTGAACACCCTCTTGGTGGACAGCAGCGGGAGCACGT 2526385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775911370160