Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 >seq4 Length=4180124 Score = 127 bits (140), Expect = 3e-24 Identities = 179/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 54863 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAG 54922 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 ||||||||| || |||||||| || ||||| || || || || || ||||| || ||||| Sbjct 54923 TCCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAA 54982 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACT-GTCATG 42240 ||| || || || || ||||||||||| || | ||| | | || || || ||| Sbjct 54983 GATACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGACGAGCTCTCGTCCGA 55042 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| ||||||| ||||||||||| || | || || || || || ||||| || Sbjct 55043 GATCCAGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTT 55102 Query 42301 AAAGAGATA 42309 ||||| || Sbjct 55103 GAAGAGGTA 55111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139057382920