Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 138 2e-27 seq5 129 9e-25 seq2 91.5 2e-13 >seq4 Length=4180124 Score = 138 bits (152), Expect = 2e-27 Identities = 326/489 (67%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| | || |||||| ||||| | || || | ||| || | Sbjct 55072 AAGAAGGCCGACTGGGCTCTCCGCTGGATCTCGGACGAGAGCTCGTCTTTCGCTGAGCGC 55013 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || | || || || ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 55012 CTCATTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTC 54953 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 |||||||||||||| ||||||||||||||||| || | |||||| | || || || Sbjct 54952 TGGCTCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGT 54893 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCC 125603 |||||||| || ||| ||||||||| ||| || || | || || | |||||| Sbjct 54892 GACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCACACACCTCCGCCGTCGTCCC 54833 Query 125604 GAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 | | || | | ||| ||| ||||||| || || || | ||| || Sbjct 54832 CA-CCCCGA--CCTCATTGACAAGATCATCAA---------GGAGGCTGTCAAGATTGAG 54785 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 || ||||| || ||||| | || || || | |||||||||||| | || ||| Sbjct 54784 CAGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGCTCATTGGCATGAACGCTACCCTCATG 54725 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATT 125783 ||| ||||||| |||||||| || || ||||| || || | | ||||| Sbjct 54724 TGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGAAACGAGAAGATG 54665 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||| | | || ||||| || || ||| | || || || |||| ||| ||||| Sbjct 54664 TACAACTCTACCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAAC 54605 Query 125844 TTTTTCGAG 125852 || |||||| Sbjct 54604 TTCTTCGAG 54596 >seq5 Length=3690501 Score = 129 bits (142), Expect = 9e-25 Identities = 311/464 (67%), Gaps = 10/464 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || || |||||||| || Sbjct 3210449 CAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGAT 3210390 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| |||| | ||||| ||| ||| || |||| || ||| | ||| Sbjct 3210389 GTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 3210330 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG---ACGGTGGC 97052 | || || || |||||| | | || | ||||||| ||| ||| | | |||||| Sbjct 3210329 CTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTGACGGTG-- 3210272 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| |||||||||| | | ||||| || ||||| | || ||| Sbjct 3210271 -ACTGGACCCTCATGTGCCCCGCCGAATGCCCCGGCCTCTCCGACGTCCACTCTGAGGAG 3210213 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 |||||||| ||| ||||||| |||||| | || |||| | || | || Sbjct 3210212 TTTGAGGCTCTCTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACTA-TCAAGGC 3210154 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| ||||| | ||| ||| |||||||| || | ||| | Sbjct 3210153 TC-AGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGCCCCTTCATGC 3210095 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | | || ||||| |||||| | ||| | |||||||||||| | Sbjct 3210094 TCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGT 3210035 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| || ||||| || ||| | |||||| | | || |||||| Sbjct 3210034 CCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAG 3209991 Score = 89.7 bits (98), Expect = 8e-13 Identities = 184/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 97949 TCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008 ||| ||| ||||||||||| ||| | |||| | ||| ||||| || |||| Sbjct 3209361 TCTCTGGGACGATGACATGAAGCAGCTCGTCATTGCCTCGGGTGGTTCCATCCAGCACAT 3209302 Query 98009 TACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAA 98068 | || ||||| || || | |||||||||||||||||||||||| || || Sbjct 3209301 TCCCGGAATCCCCGAGGACATCAAGTCCATCTACAAGACTGTCTGGGAGATTTCGCAAAA 3209242 Query 98069 GACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAA 98128 | | | || || | || |||||| | || | || ||| |||||| || ||| |||| Sbjct 3209241 GGCCGTCATTGACCTTGCCGCCGACCGTGGAGCCTTCATCGACCAGTCGCAGTCGCTCAA 3209182 Query 98129 TCTGTACGTTGCCGAGCCCACCTACAGTCGTA--TGACTTCGATACACTTTTACGCATGG 98186 | || ||||| | || | | | ||| | | |||||||| |||||||||| ||| Sbjct 3209181 CATTCACCTTGCCAACCCGTCGTTC--TCGCAGCTCACTTCGATGCACTTTTACGGCTGG 3209124 Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 || || |||||||| || || ||||| || Sbjct 3209123 AAGCGCGGACTCAAGACTGGTATCTACTACCT 3209092 >seq2 Length=4873547 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || ||||||||||||||||| || |||||||| || || ||||||||||||||||| Sbjct 436841 GTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTCTGGCTCAAGAAGCGCGGG 436782 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 || |||| || ||||| |||||| | || || || ||||||||| | ||| Sbjct 436781 CTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGACGAGGGCATGCACACC 436722 Query 125565 GACTTTGC 125572 |||||||| Sbjct 436721 GACTTTGC 436714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059042524920