Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 434 3e-116 seq2 96.9 9e-15 >seq5 Length=3690501 Score = 434 bits (480), Expect = 3e-116 Identities = 1140/1729 (66%), Gaps = 32/1729 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || ||||| ||| | |||||||| | || |||||||| || | | |||| Sbjct 3210818 GAGCGTCCCCAGCACATGATTATGCGTGTCTCGATCGGTATCCACGGCGAGAACATTGAA 3210759 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 | ||||| || || || || | | ||| || || |||||| |||| || Sbjct 3210758 AAGGTCATTGAGACCTACAACCTCATGTCGGAGCGTTACTTTACCCACGCCTCGCCTACC 3210699 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | ||| || || || | | || |||||||| || ||||| || | |||||| Sbjct 3210698 CTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAAG 3210639 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 ||||| || || || || |||| ||||| || |||| || || | || ||||||| | Sbjct 3210638 GACGACTCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACT 3210579 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGC 363747 || ||||| || ||| | |||||||| ||||||| || | |||||| |||| Sbjct 3210578 GCCGGCGGTATCGGTCTCCACATCCACAACATTCGTGCCAAGGGCTCGTACATTGCCGGC 3210519 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || ||||| || || | || |||||||| |||| | ||| |||||| | Sbjct 3210518 ACCAACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCTACTGCTCGT 3210459 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 ||||||||||||||||| |||||| || || ||||| || || |||||||| Sbjct 3210458 TACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGG 3210399 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || |||||| | || || || || || ||||| || ||| || || ||||| | || Sbjct 3210398 CACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGC 3210339 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || || ||| | || |||| || |||| ||| || ||||| Sbjct 3210338 GCCCGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCT 3210279 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGT 364047 | | ||| | ||| | ||||| |||||| || || || ||||| || | Sbjct 3210278 GACGGTGACTGGACCCTCATGTGCCCCGCCGAATGCCCCGGCCTCTCCGACGTCCACTCT 3210219 Query 364048 GACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATT 364107 || || | || ||||| ||||||||||| || ||||| |||| || ||||| || Sbjct 3210218 GAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACTATC 3210159 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || |||||||| ||||||||||| | || | |||| |||||| || |||| Sbjct 3210158 AAGGCTCAGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGCCCCTTC 3210099 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| | ||||| || | ||||||||||||||||||||||||||| || || || || Sbjct 3210098 ATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAG 3210039 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 | |||||| || || |||||||| || ||| | || ||||||||| |||||| || Sbjct 3210038 TCGTCCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCCGTCTGC 3209979 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AG-ATGGTACTTTTGACCAC 364341 |||||||| ||||| || || || || ||||| | || | || || | ||| Sbjct 3209978 AACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTACGACTTT 3209919 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 || | || | || | ||| | || || || |||||| || ||| Sbjct 3209918 AAGAAGCTCCACGAGATTACCAAGGTTGTCACCAAGAACCTCGACTGCGTCATCTCGCGC 3209859 Query 364402 AATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTT 364461 || || || || | ||| ||| || || || ||||| || ||||| | ||||| Sbjct 3209858 AACTACTACCCCGTCATTGAGGCCAAGAACTCGAACATGCGCCACCGCCCCGTCGGTCTC 3209799 Query 364462 GGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGAC 364521 ||||| ||||| || || |||| || ||| ||| ||| | ||||| ||||| | Sbjct 3209798 GGTGTCCAGGGTCTTGCCGACGCCTTCATGGCTCTCCGCATGCCCTTTGACTCGCCCGCT 3209739 Query 364522 GCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTC 364580 ||||||| || || |||||||||| || || || ||||| | || | | || Sbjct 3209738 GCTCGTGAGCTCAACCTCAAGATCTTTGAGACCATCTACCACGCCGCCCTCGAGT-CGTC 3209680 Query 364581 GTGTGATTTGGC--AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCG 364638 ||| || |||| ||| || |||||| | | || ||||| || || ||||| Sbjct 3209679 GTGCGAGATGGCCGTCGAAC--TTGGCAAGTACCCCTCGTACGAGGGCTCGCCCATTTCG 3209622 Query 364639 CAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG--CCATCTGTCCGATGGAACTGGG 364696 ||||| || | |||||||| || ||| | | || || | | || |||||||||| Sbjct 3209621 CAGGGCAAGCTTCAGTTTGACCTCTGG--GGCCGCGTCCCCACCGACCTCTGGAACTGGG 3209564 Query 364697 ATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCA 364756 | ||| || || || |||| ||| |||||||| || || || |||| Sbjct 3209563 ACGAGCTCCGCCAGAAGATTGCCCAGCACGGTGTCCGCAACTCGCTTCTTGTTGCCCCCA 3209504 Query 364757 TGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAA 364816 ||||||| || || || | ||||| ||||| ||||||||||| || || | || Sbjct 3209503 TGCCCACTGCCTCGACCTCGCAGATTCTCGGCTGGAACGAGTGCTTTGAGCCCTACACCT 3209444 Query 364817 GCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAG 364876 | || || || || || || || || || || || | ||| || | || Sbjct 3209443 CGATGCTCTACTCGCGTCGTGTCCTCTCGGGTGACTTCCAGGTCGTCTGCCCCTGGCTCC 3209384 Query 364877 TCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCG 364936 || || || | ||| || || |||| || ||||||| | |||| ||| Sbjct 3209383 TCCGTGACCTCATCAACCTTGGTCTCTGGGACGATGACATGAAGCAGCTCGTCATTGCCT 3209324 Query 364937 CTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAA 364996 | |||||| | ||| ||||||| ||| | || || || | ||| | || ||||| | Sbjct 3209323 CGGGTGGTTCCATCCAGCACATTCCCGGAATCCCCGAGGACATCAAGTCCATCTACAAGA 3209264 Query 364997 CCGTATGGGAAATTTCCATGCGAA---CTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 | || ||||| ||||| || || | ||||||| | || ||||| || || || | Sbjct 3209263 CTGTCTGGGAGATTTC---GCAAAAGGCCGTCATTGACCTTGCCGCCGACCGTGGAGCCT 3209207 Query 365054 TTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC-----TCCGCCAA 365108 | ||| ||| |||||| | ||| |||| || ||||||| | | | | Sbjct 3209206 TCATCGACCAGTCGCAGTCGCTCAAC--ATTC---ACCTTGCCAACCCGTCGTTCTCGCA 3209152 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 ||| || || ||||| || ||||| ||||| ||| || ||||| ||| Sbjct 3209151 GCTCACTTCGATGCACTTTTACGGCTGGAAGCGCGGACTCAAGACTGGT 3209103 >seq2 Length=4873547 Score = 96.9 bits (106), Expect = 9e-15 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGA-ACGTC 22495 ||| ||||| || ||||||||||||| || | | | || | ||| || | |||| Sbjct 436917 GAAAAAGGCCGACTGGGCGCTGAAATACATTACCGACGAGATGCCGTTC-CGCACGCGTC 436859 Query 22496 TTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 | ||||| ||||| ||| || || ||||| |||||||| || | ||| || || || Sbjct 436858 TGATTGCGTTTGCGTGT-GTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTC 436800 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || || | |||||| |||||| || |||||||| ||| | || || Sbjct 436799 TGGCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGC 436740 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 || ||||| | || ||||| |||||||| |||| ||| Sbjct 436739 GACGAGGGCATGCACACCGACTTTGCGTGCTTGCTGTAT 436701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353316113294