Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 149 6e-31 seq1 111 1e-19 seq2 104 2e-17 >seq4 Length=4180124 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| ||||||||||| ||| Sbjct 22755 CCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 22696 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 22695 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 22636 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 22635 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 22576 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || ||||| ||||| || ||||| |||||||| Sbjct 22575 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| || Sbjct 22983 CCACCACGAAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 22924 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| | || | ||||||||||||||| ||| Sbjct 22923 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 22864 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || |||| ||||| | Sbjct 22863 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 22804 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || ||||| |||||||| Sbjct 22803 TCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||||||||||| || |||||||| ||| Sbjct 23258 GCCACCACGGAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 23199 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 23198 CAAGGTACGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 23139 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||| | | || | ||| |||| ||||||| Sbjct 23138 AATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGAC 23079 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAG 131213 || | || | ||| || || || || Sbjct 23078 CTCCAGAGTGATGGTCTTTCCAGTGAG 23052 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 131057 TGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCT 131116 |||| ||| | |||||| |||||| ||||||||||| ||| |||| | |||||||| Sbjct 22407 TGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 22348 Query 131117 GGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGG 131176 |||| ||||| || ||||| ||||| ||| || ||||| | || | || || | Sbjct 22347 GGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCG 22288 Query 131177 TGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 |||||||| |||| || | ||| || || || || Sbjct 22287 AGGACTCGACCTCGAGAGTGATGGTCTTGCCAGTAAG 22251 >seq1 Length=5948321 Score = 111 bits (122), Expect = 1e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| Sbjct 4244166 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGAT 4244107 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| ||| ||||| | || | || || | ||||| | || Sbjct 4244106 GCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTC 4244047 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || ||| | ||| || ||||| || || || ||||||||||||||| Sbjct 4244046 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 4244001 >seq2 Length=4873547 Score = 104 bits (114), Expect = 2e-17 Identities = 199/287 (69%), Gaps = 5/287 (2%) Strand=Plus/Minus Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214 |||| || | || |||||| ||| |||||| |||| ||||| ||| ||||| || || Sbjct 436863 GCGTCTGATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGAT 436804 Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273 || | |||| || | |||| | |||| || ||||| ||| |||||||| || | Sbjct 436803 TTTCTGGCTCAAGAAGCGCGGGCTT-ATGCGGGGTCTGACCTTTTCAAACGAGCTCATCT 436745 Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACG 46333 |||||||||||||| |||| || ||||||||||| || | || || | | ||| | Sbjct 436744 CGCGCGACGAGGGCATGCACACCGACTTTGCGTG-CT-TGCTGTATGGC-CATCTGCGCC 436688 Query 46334 ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGG 46393 | | || ||| |||| | ||| || |||||||| | ||||| |||| Sbjct 436687 ATCGGTGCTCGGAGGACGAGGTGCACAACATTATCCGCGAGGCGGTCGAGATTGAAAAGG 436628 Query 46394 AGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 ||||| | |||| || || ||| ||| ||| | ||||| |||||| Sbjct 436627 AGTTTCTCACGGATGCGCTCCCCTGTGCGCTGATCGGCATCAACGCA 436581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012699697280