Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 9e-11 >seq2 Length=4873547 Score = 82.4 bits (90), Expect = 9e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126178 TTGGTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 |||||| ||||||| || | ||| |||| ||||| || |||| || || || || || Sbjct 2022897 TTGGTGAAAATGTAACGAGC-GCTAGCCGCGTCCTTTCCACCCTGCATGCGAGTACCGAA 2022955 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||||| | ||||| | | | | |||||| ||||||||||| ||| || | Sbjct 2022956 TTGACCATTGGGCTCGAGAAGATTGATGTTGTTGCTTCCCACAAAGTTCTGGGCTAGGCC 2023015 Query 126297 GACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTA 126356 ||||||||| || ||||||||||||| | ||| | || | ||||| ||||| Sbjct 2023016 GACAATGGTAGAAGTCAAACTCTGCTCGCCGTGGTGGTATGCAGTATTCTCGGATACGTA 2023075 Query 126357 GCCGCTCAGCTGCGCAACCTTGAT 126380 || | ||||| || |||||||| Sbjct 2023076 ACCACCGAGCTGAGCGACCTTGAT 2023099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391870079200