Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 143 5e-29 seq3 111 3e-19 seq4 109 1e-18 >seq2 Length=4873547 Score = 143 bits (158), Expect = 5e-29 Identities = 397/604 (66%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 218505 CATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATG 218560 ||| || ||| ||||| | |||||||||||||| | ||||| |||| | || Sbjct 2023247 CATTCCTATCCAGGACTTTGTGAACAAGGAGCTCATTTTGTTCTCAATGGCGG-ACAATA 2023189 Query 218561 TGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCT 218620 | ||||| ||||| |||| || || || ||||| ||||| ||| || ||| Sbjct 2023188 TC---CGTTCCATTCCTTCGGTGGCCGACGGTCTGAAGCCTGGTCAGCGCAAGGTCATCT 2023132 Query 218621 TTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATG 218680 | || |||||||| || || |||| || |||||||||||| | |||||| | Sbjct 2023131 TCGCATGCTTCAAGCGCAAGCTCAGCAAAGAGATCAAGGTCGCTCAGCTCGGTGGTTACG 2023072 Query 218681 TATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA 218740 ||||||| | | ||| ||||| ||||| ||||||||| || | ||||||| ||| Sbjct 2023071 TATCCGAGAATACTGCATACCACCACGGCGAGCAGAGTTTGACTTCTACCATTGTCGGCC 2023012 Query 218741 TGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTG 218800 | || ||| ||| |||||| || |||||||| || | || ||||| ||||| || | Sbjct 2023011 TAGCCCAGAACTTTGTGGGAAGCAACAACATCAATCTTCTCGAGCCCAATGGTCAATTCG 2022952 Query 218801 GTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGT 218860 || |||| | |||||||||||| ||| || | || || || || || | Sbjct 2022951 GTACTCGCATGCAGGGTGGAAAGGACGCGGCTAGCGCTCGTTACATTTTCACCAACATTC 2022892 Query 218861 CGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGG 218920 | | | |||| ||| | ||| | |||| || |||| | || || || || | | Sbjct 2022891 CCCGCATGACCCGCACCATCTTCCACAAGGCGGACGATGCCATTCTCAACTACCTGGTTG 2022832 Query 218921 ACGATGGTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 | || || | || || ||||| |||| || | ||| | | || | | || || Sbjct 2022831 AGGACGG-CCAGCGCATCGAGCCAGAGTACTACCTCCCTACAGTGCCCATGGTTCTGGTC 2022773 Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAG 219039 ||||| ||| ||||||| || || || | || || || || ||||| || | Sbjct 2022772 AATGGAGCCGATGGTATTGGTACCGGTTGGAGCACCTCGATCCCGAACTACAACCCTCGG 2022713 Query 219040 GACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCG 219099 ||||| | |||||| || || ||||| || ||||| ||| |||| ||||| Sbjct 2022712 GACATTGTCGACAACCTCCGTCGCCTCATGCGCGGTGAGGAGCTGGAGAGGATGACTCCG 2022653 Query 219100 TGGT 219103 |||| Sbjct 2022652 TGGT 2022649 >seq3 Length=4554691 Score = 111 bits (122), Expect = 3e-19 Identities = 441/679 (65%), Gaps = 34/679 (5%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || ||||||||||||||||||||||| ||||| | || |||||||| | ||| Sbjct 1114345 GGCTCGCTCTCGGGTGGTTGGAAGATGAAGCTCGCCCTTGCGCGTGCCATTCTTTTCCGT 1114286 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| || ||||| | ||| |||||| ||||| Sbjct 1114285 GCCGACATTCTCCTCCTCGACGAGCCCACTAACCATCTCGACGTTGTCAACGTTACCTGG 1114226 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || |||| | | || |||| ||||| |||||||| Sbjct 1114225 CTCATCGACTACCTCACCTCGCTCAAGACCTGTACCTCGATCATGGTCTCGCACGACTCG 1114166 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCA--TCATTCACTATGAGCAAAATCTGAAGCTCT 279936 | |||||| | ||| || | | || | ||| || | ||| || ||||| Sbjct 1114165 GACTTCCTTAA--CCGCACCATCACCGATGTCCTCCAC-ATCAACAACTTC--AAGCT-- 1114113 Query 279937 CCAAGC---ACATCGGCAACCTGTCTGCTTTCGT-GGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||||| || ||||||||| |||||||| | | | | ||| ||||| ||| Sbjct 1114112 -CAAGCGCTACCCCGGCAACCTCGACGCTTTCGTCGACCACGTTCCC-GAGGCCCGTGCC 1114055 Query 279993 TACTATGA-CCTGAAG--GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||| | | ||| | | | | ||||| | |||| || || |||| Sbjct 1114054 TACTTCCAGCTTGACGTTGGAGAGGACTACAAGTTCAAGCTCCCCGACCCTCCCCTTCTT 1113995 Query 280050 GAGGGCATCACATCAAAGGA----TCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGC 280105 || || ||| | ||||| |||| || | ||| | || |||||| || Sbjct 1113994 GACGGTGTCAAGACCAAGGAGAAGTCGC----TCCTCAAGATGCGCAACGTCTCGTTCCA 1113939 Query 280106 TTATCCC-AATGGCC---CCAACATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACT 280161 || ||| | ||| ||| || ||| | | |||||| ||||| || | | Sbjct 1113938 GTACCCCGGTTCGCCCGTCCAGCAGCTTTA-CGACGTCAACCTCCAGGTCTCGCTCTCGT 1113880 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || | | || | || ||||| ||| | || ||||| ||||| |||| |||| | Sbjct 1113879 CGCGTGTCGCCGTTCTCGGTCCCAACGGTTCCGGAAAGTCGACCCTCGTCAAGCTCCTTA 1113820 Query 280222 CTGGCGAGACCCAGGCCACTGAG---GGGTCCGTTTGGAAGCATCCCAACATGCGGATGG 280278 | |||||||| || ||| || || |||| |||||||| |||||| | || | Sbjct 1113819 CCGGCGAGACTGAGCCCAACAAGGGCGGAACCGTCTGGAAGCACCCCAACCTCGTCATTG 1113760 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 |||||| || |||||||||||||||||||| || | ||||| ||| |||||| | Sbjct 1113759 GTTACGTTGCCCAGCACGCTTTCCACCACATTGACCAGCACCTTGACTCTACTCCTCTCG 1113700 Query 280339 AATACATTCAGTGGCGCTA 280357 | ||||| | ||||| || Sbjct 1113699 AGTACATGCTCTGGCGTTA 1113681 >seq4 Length=4180124 Score = 109 bits (120), Expect = 1e-18 Identities = 291/440 (66%), Gaps = 16/440 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||| |||||||||||||| || Sbjct 54597 TCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTA 54656 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | || || || |||| | ||||| || |||||||| | Sbjct 54657 GAGTTGTACATCTTCTCGTTTCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAATG 54716 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| || || |||||||||||| | ||||| |||| ||||| || Sbjct 54717 TACTGGCACATGAGGGTAGCGTTCATGCCAATGA-GCGACACGGGAAGAGCCTCGGTGAG 54775 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAA--TTG-CCTTCACCT----GTGCCA 251794 ||| |||| || | || ||||||| | | ||| | | | | ||| Sbjct 54776 GAACTCCTGCTCAATCTTGACAGCCTCCTTGATGATCTTGTCAATGAGGTCGGGGTGGGG 54835 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 ||| || || | || | | ||||| | |||| | ||| ||||||| Sbjct 54836 ACGACGGC-------GGAGGTGTGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGACCCT 54888 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| || ||||| ||||||||| | || || ||||| | ||||| ||| ||| Sbjct 54889 CGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTTCTTGA 54948 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | | || ||||| ||||| | | |||||| || | | |||| Sbjct 54949 GCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAAGGCAA 55008 Query 251975 CAAGGCGCTCAGCAAACGAC 251994 ||||||||||| || ||| Sbjct 55009 TGAGGCGCTCAGCGAAAGAC 55028 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 |||||| | || ||||| ||||| || ||||| ||||| ||||| |||| ||||| ||| Sbjct 3058683 GGTGTCGTCGGCCCCAACGGTGCCGGAAAGTCGACCCTTATCAAGCTCCTCACTGGTGAG 3058624 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| || ||||| |||| ||||| ||| | || | | |||||| || Sbjct 3058623 ACCATCCCCCAGGAGGGTACCGTGCACAAGCACCCCGCGCTCCGTGTCGGTTACGTTGCC 3058564 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||| | ||||| |||| |||| || ||| ||||| ||| Sbjct 3058563 CAGCACGCCTTCCACCACATCAACTTGCACCTCGACAAGACTGCTGTCCAGTACATCCAG 3058504 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 3058503 TGGCGTTA 3058496 Score = 96.9 bits (106), Expect = 7e-15 Identities = 176/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || ||||||||||||||||||||||| | || | || ||||| || | ||||| Sbjct 3059151 TCGCTCTCGGGTGGTTGGAAGATGAAGCTCGAGCTTGCCCGTGCCATGCTTATCGGTGCC 3059092 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || |||||||| ||||||||| ||||| | | || || ||||| Sbjct 3059091 GACATTCTCCTCCTCGATGAGCCTACCAACCACTTGGACGTCCAGACTGTCGCTTGGCTC 3059032 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | |||||| |||| || | | | | | | || ||||| ||||||||||| Sbjct 3059031 GAAAACTACCTCACCAACCTCCCCCAGATGACCTGCATGATCGTCTCGCACGACTCTGGT 3058972 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || || || | | ||| || ||||| ||| || ||||||| || | Sbjct 3058971 TTCCTCGACAATGTCTGTACCGACATTATCCACTACGAGACCAA---GAAGCTCGCCTAC 3058915 Query 279942 CACATCGGCAACCTGTC 279958 ||| |||||||| || Sbjct 3058914 TACAAGGGCAACCTTTC 3058898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836576124297