Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 170 4e-37 seq1 141 2e-28 seq3 129 1e-24 seq2 125 1e-23 >seq4 Length=4180124 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || || ||||| || |||||| Sbjct 22755 CCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 22696 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 22695 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 22636 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||| ||||| | || || || Sbjct 22635 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 22576 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 22575 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||| || |||||||| || || ||| Sbjct 22983 CCACCACGAAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 22924 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | || ||||| || || Sbjct 22923 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 22864 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||||| || |||||||| | || || || Sbjct 22863 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 22804 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| | |||||||||||| |||||||| Sbjct 22803 TCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 127 bits (140), Expect = 4e-24 Identities = 312/468 (67%), Gaps = 4/468 (1%) Strand=Plus/Plus Query 9937 TGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGA 9996 |||| |||| ||| ||| |||| || || |||||||||||||| |||||||| || Sbjct 54562 TGACACCCGACTTGGCGTAGGCCGAGACTCGCGACTCGAAGAAGTTGGCCTTGCCCTGGA 54621 Query 9997 GGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGA 10056 | || || | |||||| ||||| |||||||| | | || ||| || |||| Sbjct 54622 GCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTTTCCGA 54681 Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116 | || || | ||||| || || ||||| |||||||||| ||| ||| | ||||| Sbjct 54682 GGGCGACGAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCA 54741 Query 10117 TGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||||| | ||| || |||| | || ||| | ||| |||| || | ||| || Sbjct 54742 TGCCAATGA-GCGACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCC 54800 Query 10176 TCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCG-AGCTTCGAATACAG 10234 |||| || ||| | | | | ||| ||| | | || || | | | || Sbjct 54801 TCCTTGATGATCTTGTCAATGAGGTCG-GGGTGGGGACGACGGCGGAGGTGTGTGAAGAG 54859 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 ||| |||| | |||||| |||||||| || ||||| ||||||||| || Sbjct 54860 GAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 54919 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 || ||||||||||| || || || |||||||| || | | |||||| || ||||| Sbjct 54920 GAGTCCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAA 54979 Query 10355 CAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 | | |||||| ||| | |||| | ||||||||| ||||| || Sbjct 54980 GAAGATACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA 55027 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | || || || | |||||| |||||||| ||||| | || ||| Sbjct 22405 TAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 22346 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| ||||||||||||||||| || ||||| ||||||||| || |||||||| | Sbjct 22345 TCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAG 22286 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | |||||||| || || || ||| Sbjct 22285 GACTCGACCTCGAGAGTGATGGTCTTGCCAGTAAGG 22250 >seq1 Length=5948321 Score = 141 bits (156), Expect = 2e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | |||||| |||||||| ||||| | || ||| Sbjct 4244177 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 4244118 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| |||||||| || ||||| ||||||||| ||||||||||| | Sbjct 4244117 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 4244058 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 4244057 GACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || | || || || | |||||| |||||||| ||||| | || ||| Sbjct 3541728 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 3541669 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| || ||||| |||||||| || ||||| ||||||||| ||||||||||| | Sbjct 3541668 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 3541609 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || || || || | ||||||||| || |||||||||||||| || Sbjct 3541608 GACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTAAC 3541565 >seq3 Length=4554691 Score = 129 bits (142), Expect = 1e-24 Identities = 663/1036 (64%), Gaps = 31/1036 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | || || ||| ||||| | ||||| ||||||||| Sbjct 1113681 TAACGCCAGAGCATGTACTCGAGAGGAGTAGAGTCAAGGTGCTGGTCAATGTGGTGGAAA 1113740 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCC--CCGAG 225095 || |||||||| ||||| | ||| | |||||| |||||||| || | || || | Sbjct 1113741 GCGTGCTGGGCAACGTAACCAATGACGAGGTTGGGGTGCTTCCAGACGGTTCCGCCCTTG 1113800 Query 225096 TCGGT-TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||||||||| |||| ||||| ||| || | ||| || | ||| ||||| Sbjct 1113801 TTGGGCTCAGTCTCGCCGGTAAGGAGCTTGACGAGGGTCGACTTTCCGGAACCGTTGGGA 1113860 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGAT-CTC 225213 || | ||| | | || || || | | ||||| ||| |||| | | ||| | || Sbjct 1113861 CCGAGAACGGCGACACGCGACGAGAGCGAGACCTGGAGGTTGACGTCG-TAAAGCTGCTG 1113919 Query 225214 A--GGGCCAGTTTGG-TAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTT 225270 |||| | || || || | ||| |||| ||| | || | ||||| Sbjct 1113920 GACGGGCGAACCGGGGTACTGGAACGAGACGTTGCGCATCTTGAGGAGCGACTTCTCCTT 1113979 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GTCACCGCGTCC 225328 || | | ||| || || | || ||||||| || ||||| ||| | | | Sbjct 1113980 GGTCTTGACACCGTCAAGAAGGGGAGGGTCGGGGAGCTTGAACTTGTAGTCCTCTCCAAC 1114039 Query 225329 TTCAGG-TCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 ||| | | | |||| | |||||||| | | |||||||| ||||| || Sbjct 1114040 GTCAAGCTGGAAGTAGGCACGGGCCTCGGGAACGTGGTCGACGAAAGCGTCGAGGTTGCC 1114099 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCG-T 225446 | ||| | ||||||||| ||| || || | ||| || | |||| | Sbjct 1114100 GGGGTAGCGCTTGAGCTTGAAGTTGTTGATGTGGAGGACAT----CGGTGATGGTGCGGT 1114155 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGG 225505 ||||||| | |||||||| || || ||||| || | ||| || | | || ||||| Sbjct 1114156 TAAGGAAGTCCGAGTCGTGCGAGACCATGATCGAGGTACAGGT-CTTGAGCGAGGTGAGG 1114214 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | ||||||||| | |||||| ||||| | ||||| || || ||||| || || Sbjct 1114215 TAGTCGATGAGCCAGGTAACGTTGACAACGTCGAGATGGTTAGTGGGCTCGTCGAGGAGG 1114274 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || ||||| ||| | || ||||| |||| || | |||||||| ||||| || || Sbjct 1114275 AGAATGTCGGCACGGAAAAGAATGGCACGCGCAAGGGCGAGCTTCATCTTCCAACCACCC 1114334 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTC 225685 || || |||||||| || ||||| | ||||||||||| | | ||| ||| Sbjct 1114335 GAGAGCGAGCCGATAGAGTGCTGCTGCTTCTCAGCGTCAAAGCCGACCGACTCGAGAGTC 1114394 Query 225686 TGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCA 225745 | || ||||| | | |||| | ||| | | | || || | || Sbjct 1114395 GAGCGGATCTCGTCGGGGGTAC--CGAGGAG--ACGCTTGTCGCTGAGGACCC--AGTCG 1114448 Query 225746 TATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGC 225805 | || ||| | |||| ||||||||||||| | ||||| | || |||| | Sbjct 1114449 ACAATGGAGATGGACTCCTCAGAGCCGTCAATGTCGTGCTGGACGTAGAAGGTGCGGACC 1114508 Query 225806 TGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTC 225865 | || | |||||||||||||| | |||| || |||| || | ||||| | Sbjct 1114509 TCGGAGGGGTCGGGGAAGCCCTCGACCTGGTTGTTGACAATGGCGTTCATGAGGGTCGAC 1114568 Query 225866 TTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGG--C 225923 || || | ||||| | || | ||| ||||| | | || ||||||| |||| Sbjct 1114569 TTTCCGGTACCGTTACGGCCAAGGAGACCGTAGCGGTGGCCACGCTTGAGACGGAGGTTG 1114628 Query 225924 GCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACT-CGCAA--TCGCACA 225980 ||||| || || || |||||| |||| ||||||||| ||||| | ||| | ||| | Sbjct 1114629 GCGTG--GTGGAGAAGAATCTTGGCACCGTAGGCAAGGTTGAACTGCTCAATGTTGCAGA 1114686 Query 225981 GGTCCTCACCCTCCTC 225996 |||||||||||||||| Sbjct 1114687 GGTCCTCACCCTCCTC 1114702 >seq2 Length=4873547 Score = 125 bits (138), Expect = 1e-23 Identities = 329/496 (66%), Gaps = 16/496 (3%) Strand=Plus/Plus Query 176040 TTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATCCTGTTCCTATT 176099 ||||| || || ||| |||||||| ||| || ||||| | || || || || Sbjct 2022699 TTGTCGACAATGTCCCGAGGGTTGTAGTTCGGGATCGAGGTGCTCCAACCGGTACCAATA 2022758 Query 176100 CCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGGTTCAATC 176159 || | |||||| ||||| | | || | || || | ||||| || || || || Sbjct 2022759 CCATCGGCTCCATTGACCAGAACCATGGGCACTGTAGGGAGGTAGTACTCTGGCTCGATG 2022818 Query 176160 CGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCC 176219 || | |||||| || | |||||||| || | ||||| ||||||||||| || Sbjct 2022819 CGCTGGCCGTCCTCAACCAGGTAGTTGAGAATGGCATCGTCCGCCTTGTGGAAGATGGTG 2022878 Query 176220 CGGGTGTTG-GGGGACAGTTGTGTGAAGATATACCTAGC---AGACGCACTGTCCTTGCC 176275 ||||| || ||||| |||| ||||| || || | ||| || ||| |||||| || Sbjct 2022879 CGGGTCATGCGGGGAATGTTG-GTGAAAATGTAACGAGCGCTAGCCGC---GTCCTTTCC 2022934 Query 176276 TCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACC 176335 || || | ||| | ||||||||| || || || | ||||||||| || || Sbjct 2022935 ACCCTGCATGCGAGTACCGAATTGACCATTGGGCTCGAGAAGATTGATGTTGTTGCTTCC 2022994 Query 176336 CACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAG--AGACGC--CTCGCCGTGGT 176391 ||| ||| ||||| | ||||| |||| | || | || | ||||||||||| Sbjct 2022995 CACAAAGTTCTGGGCTAGGCCGACAATGG----TAGAAGTCAAACTCTGCTCGCCGTGGT 2023050 Query 176392 GATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGA 176451 | || | | ||||| | ||| || | | ||| ||||| ||||| |||| || Sbjct 2023051 GGTATGCAGTATTCTCGGATACGTAACCACCGAGCTGAGCGACCTTGATCTCTTTGCTGA 2023110 Query 176452 GGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGA 176511 | |||||||| || | ||| | | ||| ||||| ||||||||||| ||| | | Sbjct 2023111 GCTTGCGCTTGAAGCATGCGAAGATGACCTTGCGCTGACCAGGCTTCAGACCGTCGGCCA 2023170 Query 176512 CCGACGGAATGGAACG 176527 |||| ||||||||||| Sbjct 2023171 CCGAAGGAATGGAACG 2023186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622204155240