Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq1 82.4 6e-11 >seq4 Length=4180124 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || || || || ||||||||||| ||| Sbjct 22758 ATACCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCG 22699 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || || ||| |||| |||||||| ||||| ||| Sbjct 22698 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGA 22639 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | ||||| | || ||| Sbjct 22638 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCG 22579 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || || || |||||||| Sbjct 22578 ACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||| || || |||||| | ||||||||||| |||||||| || ||||| || ||| Sbjct 22911 TCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 22852 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | |||| |||||||| || || || || | || | Sbjct 22851 TCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATG 22792 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| |||| || || || || |||||||| Sbjct 22791 GTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 >seq1 Length=5948321 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||||||||| ||||| || || ||||| || ||| Sbjct 4244156 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 4244097 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||| | || || || || | ||| | Sbjct 4244096 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATG 4244037 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || |||||||| || || || || |||||||||||||| Sbjct 4244036 GTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGC 4243999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134312953404