Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 466 3e-126 seq4 288 2e-72 seq2 140 6e-28 >seq5 Length=3690501 Score = 466 bits (516), Expect = 3e-126 Identities = 1161/1752 (66%), Gaps = 57/1752 (3%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 |||||| ||||| |||||||| ||||| | || || ||||| | | |||| | | Sbjct 3209181 GTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCGGCAAGGTCAATGACGGC 3209240 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 ||| || || ||||| | | ||||||||||||| ||||| || |||||||| || Sbjct 3209241 CTTTTGCGAAATCTCCCAGACAGTCTTGTAGATGGACTTGATGTCCTCGGGGATTCCGGG 3209300 Query 243997 GATGTTCTGCACCGAGCC-CTTGTGG--ACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053 |||| ||| | || || | | || | || |||||| | ||||| ||||| ||| Sbjct 3209301 AATGTGCTGGATGGAACCACCCGAGGCAATGACGAGCTGCTT---CATGTCATCGTCCCA 3209357 Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC---ACCACCTGAAACTCTCC 244110 || || | | || | | || ||| ||| | || ||||| || || || Sbjct 3209358 GAGACCAAGGTTGATGAG-GTCACGG--AGGAGCCAGGGGCAGACGACCTGGAAGTCACC 3209414 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 ||| || || || ||| |||||| | | || ||||| | || ||| | ||| Sbjct 3209415 CGAGAGGACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCAAAGCACTCGTTCCAGCC 3209474 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCC 244230 || ||||||| || ||||| |||||||| | || || || ||| | || || Sbjct 3209475 GAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACAAGAAGCGAGTTGCGGACACC 3209534 Query 244231 GTGCCTCTGG---ATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTC 244287 |||| ||| || | | |||||||| ||||| ||| | | | | | || | Sbjct 3209535 GTGC---TGGGCAATCTTCTGGCGGAGCTCGTCCCAGTTCCAGAGGTCGGTGGGGAC--- 3209588 Query 244288 GCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCT-GCCCTCGT 244346 | ||||||| | ||||||||| ||| |||| || | |||| |||||||| Sbjct 3209589 ------GCGGCCCCAGAGGTCAAACTGAAGCTTGCCCT-GCGAAATGGGCGAGCCCTCGT 3209641 Query 244347 AGGTCGGGTAGGGACC--GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTA 244404 | | ||||| || || | ||||| || || | ||||||||||||| Sbjct 3209642 ACGAGGGGTACTTGCCAAGTTCGAC--GGCCATCTCGCACGACGACTCGAGGGCGGCGTG 3209699 Query 244405 GTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGAT 244464 |||||||||||| |||||| | ||| | || || || | || ||||| || Sbjct 3209700 GTAGATGGTCTCAAAGATCTTGAGGTTGAGCTCACGAGCAGCGGGCGAGTCAAAGGGCAT 3209759 Query 244465 GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCG 244524 || | ||||||| ||||||| || ||||| || |||| |||| ||| | ||| || Sbjct 3209760 GCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCG 3209819 Query 244525 CTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAG 244584 | |||| ||| | |||| || |||||||| |||||| ||| || || ||| Sbjct 3209820 CATGTTCGAGTTCTTGGCCTCAATGACGGGGTAGTAGTTGCGCGAGATGACGCAGTCGAG 3209879 Query 244585 GTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATC 244644 ||| ||||| | | | ||| ||| || ||||||||| | | || Sbjct 3209880 GTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTCTTAAAGTCGTAGGTGCCGTTCTC 3209939 Query 244645 CTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGC 244704 | ||| |||| | |||||| | ||| |||||||||||||| Sbjct 3209940 AAAGTCGA------------CAAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGC 3209987 Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||| || | | | ||||| || |||||| ||||||||||| |||||||||| Sbjct 3209988 AACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGACGACTTGATGGT 3210047 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||| |||||||| || ||||||||| |||| ||||||||||||||||||||||| || Sbjct 3210048 GCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCC 3210107 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || ||||| |||||| |||| | | |||||| | | |||||||| ||| | Sbjct 3210108 ACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCCTTGATAGTCTT 3210167 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGAC 244944 ||| |||||||||| |||||| ||| || ||||| ||||| ||| Sbjct 3210168 GCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGAC 3210227 Query 244945 CTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGAC 245004 ||| ||||||||||| || ||||||||||| |||| || ||| | ||| ||| Sbjct 3210228 GTCGGAGAGGCCGGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGAC 3210287 Query 245005 CCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTC 245064 | | |||||||||||| | |||||||||||| | ||||||||| | || | ||| Sbjct 3210288 ACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTC 3210347 Query 245065 GTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTC 245124 ||| ||| |||||| | || || | ||||| ||||| ||| ||||||||||||| Sbjct 3210348 CTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCGGCGTGCCAGGGCTC 3210407 Query 245125 CATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAG 245184 | ||||| || | ||| ||||| |||||||| || |||||||| | | | |||| Sbjct 3210408 GAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGA----CGTAACGAG 3210463 Query 245185 C----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCT 245240 | |||| | || || || | || || || |||||||||| |||||||||||| Sbjct 3210464 CAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGG 3210523 Query 245241 TGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCT 245300 ||||| | ||||||| | | | |||| |||| | || | |||||||| || Sbjct 3210524 CAATGTACGAGCCCTTGGCACGAATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCT 3210583 Query 245301 TGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCA 245360 ||||||| |||||||| |||||| ||||| ||||| || || ||| ||||| Sbjct 3210584 TGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCA 3210643 Query 245361 TGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGG 245420 || || || ||||| || |||| |||||| | |||| | | | |||||| || || | Sbjct 3210644 TGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAG 3210703 Query 245421 GGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGA 245480 | ||||||||||||||| || ||| | || ||| |||| | | || | Sbjct 3210704 GCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAATGACCTTTTCAA 3210763 Query 245481 TGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATG- 245539 |||| ||||||||||| | | | | ||| | |||||||||| |||| | Sbjct 3210764 TGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATGTGCTGGGGACGCTCGGCGA 3210823 Query 245540 -GGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGA 245598 | || | | | | ||| | ||| || ||||| || |||||||| |||||||| Sbjct 3210824 CCTTGCCGCCGATGC--GGAGGAGGTACGAACGCTCAAGGGTCTTGAAGCCAAAGTAGTT 3210881 Query 245599 GTAGCCAAAGTC 245610 |||| ||||||| Sbjct 3210882 GTAGGCAAAGTC 3210893 >seq4 Length=4180124 Score = 288 bits (318), Expect = 2e-72 Identities = 397/542 (73%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||||||||| ||||| || |||||||||||||||||||| |||||||| ||| | Sbjct 55108 CTCTTCAAGGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGC 55049 Query 42669 TGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | | | || | | | |||| ||| | || | |||||| | ||||| || Sbjct 55048 TGGATCTCG-GACGAGAGCTCGTCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGA 54990 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGA 42786 ||| |||||||||||||| | |||||||| ||||||||||||||| || || || | Sbjct 54989 GGGTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTC-A 54931 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 ||||||||||||||||||| ||||| |||||| | |||||||| || || | |||| Sbjct 54930 TGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACT 54871 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG 42906 ||||||| ||||| ||| | |||||| | | ||| || | || | Sbjct 54870 TTGCCTGTCTCCTCTTC---ACACACCTCCGCCGTCGTCCCCACCCCGACC---TCATTG 54817 Query 42907 CC---ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||||| |||||| || |||| ||| ||||||||||||| || | || |||| Sbjct 54816 ACAAGATCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCG 54757 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 |||| || | ||||||||| |||||||||| ||||||| ||| |||||||||| Sbjct 54756 TGTCGCTCATTGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACC 54697 Query 43024 ATCTCCT-GT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 ||| || || ||| | || | || | | |||||| | | ||||||||||| Sbjct 54696 GTCTGCTCGTCGCC--CTCGGAAACGAGAAG-ATGTACAACTCTACCAACCCCTTCGACT 54640 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 ||||||||| |||||| | |||||||| ||||||| |||||| ||| ||| | | || Sbjct 54639 TTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGAGTCTCGGCCT 54580 Query 43141 AC 43142 || Sbjct 54579 AC 54578 >seq2 Length=4873547 Score = 140 bits (154), Expect = 6e-28 Identities = 360/551 (65%), Gaps = 48/551 (9%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA-- 42690 || || ||| ||| ||||| ||||||||||| || | || | |||||| | Sbjct 436928 CCGTGTATCCGGAAAAAGGCCGACTGGGCGCTGAAATACAT------TACCGACGAGATG 436875 Query 42691 -CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 ||||| || | | ||| | || ||| | ||||||||||||||||| || ||| | Sbjct 436874 CCGTTCCGCACGCGTCTGATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCG 436815 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 || || | || |||||||||||| || | | |||| || || ||||| || ||| Sbjct 436814 TTTGCGGCGATTTTCTGGCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAAC 436755 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | |||||||| |||| | |||||||| ||| | ||| | || Sbjct 436754 GAGCTCATCTCGCGCGACGAGGGCATGCACACCGACTTTGCGTGCTTGCTG---TATGGC 436698 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 || || | || | |||| |||| ||| | ||| ||| ||||| || ||| Sbjct 436697 CATCTGCGCCATCGGTGCTCGGAGGACGAGGTGCACAACATTATCCGCGAGGCGGTCGAG 436638 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAAC-CA-- 42985 || || |||||||| |||||| | |||| ||| ||| | ||| ||||||| ||| || Sbjct 436637 ATTGAAAAGGAGTTTCTCACGGATGCGCTCCCCTGTG-CGCTGATCGGCATCAACGCAGA 436579 Query 42986 -------CGACCT------------------------CATGTGCAAGTACATCCAGTACG 43014 | |||| ||||||| ||||||| | | || Sbjct 436578 CGTAAGTCAACCTCATAGACCCCTACTCACCCCAGTCCATGTGCCAGTACATGGAATTCG 436519 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 |||| |||| ||| | | | | || |||| ||||| || || | ||||| Sbjct 436518 TCGCGGACCGCCTCGTCGTCGCGCTCGGCTACAGCAAAATCTACCACGCGGCCAACCCCT 436459 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 |||||| |||||| ||||||| || |||||||| |||||||||||||| ||||||| Sbjct 436458 TCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGGCCAACTTTTTCGAGTCGCGCGTCA 436399 Query 43135 CCGACTACCAG 43145 || |||||| Sbjct 436398 GCGCGTACCAG 436388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338999327920