Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 seq2 105 1e-17 >seq4 Length=4180124 Score = 118 bits (130), Expect = 2e-21 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 243498 ACAA-ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA- 243555 |||| ||||||| || || || | | || |||| ||| | ||| ||| |||| Sbjct 54816 ACAAGATCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCG 54757 Query 243556 TGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGAC 243615 || || || |||||||||||| || |||||| | |||||||| || || || |||||| Sbjct 54756 TGTCG-CTCATTGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGAC 54698 Query 243616 CGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTT 243675 || | || |||| || || | ||||| |||||||||| | |||||||| | |||| Sbjct 54697 CGTCTGCTCGTCGCCCTCGGAAACGAGAAGATGTACAACTCTACCAACCCCTTCGACTTT 54638 Query 243676 ATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 |||||| | || ||||| || || || | ||||||||||| Sbjct 54637 ATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGA 54597 >seq2 Length=4873547 Score = 105 bits (116), Expect = 1e-17 Identities = 350/534 (66%), Gaps = 14/534 (3%) Strand=Plus/Plus Query 297235 GTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGAT 297294 |||||| || ||||| || ||||| | ||||| || |||||||||||| || Sbjct 2022698 GTTGTCGACAATGTCCCGAGGGTTGTAGTTCGGGATCGAGGTGCTCCAACCGGTACCAAT 2022757 Query 297295 TCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGAT 297354 ||| | ||||| ||||||| | || | ||| | || |||||||| ||||| Sbjct 2022758 ACCATCGGCTCCATTGACCAGAACCATGGGCACTGTAGGGAGGTAGTACTCTGGCTCGAT 2022817 Query 297355 CTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTG 297414 | ||||| ||| ||| || || |||| |||||||| | | ||| | Sbjct 2022818 GCGCTGGCCGTCCTCAACCAGGTAGTTGAGAATGGCATCGTCCGCCTTGTGGAAGATGGT 2022877 Query 297415 TCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCAC 297473 || ||| || ||| ||| |||||||| || || || || || ||||| |||| Sbjct 2022878 GCGGGTCATGCGGGGAATGTTG-GTGAAAATGTAACGAGCGCTAGCCGCGTCCTTTCCAC 2022936 Query 297474 CCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCG 297532 |||||| | | |||||| || || | ||| | | || |||||||| |||||||| Sbjct 2022937 CCTGCATGCGAGTACCGAATTGACCATTGGGCT-CGAGAAGATTGATGTTGTTGCTTCCC 2022995 Query 297533 ACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCGCCATGGTGATA 297591 ||| | | ||| || ||| || ||||| || | |||| |||| ||||| || Sbjct 2022996 ACAAAGTTCTGGGCTAGGCCGACAATGGTAGAAGTCAAACTCTGCT-CGCCGTGGTGGTA 2023054 Query 297592 GGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATT 297651 || ||| ||| | |||||||| | || ||| || ||||| | || | | | || Sbjct 2023055 TGCAGTATTCTCGGATACGTAACCACCGAGCTGAGCGACCTTGATCTCTTTGCTGAGCTT 2023114 Query 297652 GCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGA 297711 ||||||||| || | || || || || ||| ||| || | ||| || | ||||| Sbjct 2023115 GCGCTTGAAGCATGCGAAGATGACCTTGCGCTGACCAGGCTTCAGACCGTCGGCCACCGA 2023174 Query 297712 CGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAAATAAGTTCCTTGT 297761 |||||| || | || || |||| ||||||||||| || ||||||| Sbjct 2023175 AGGAATGGAACG---GATATTGT-CCGCCATTGAGAACAAAATGAGCTCCTTGT 2023224 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| |||||||| || |||||| | || ||||||| || || || Sbjct 436541 CATGTGCCAGTACATGGAATTCGTCGCGGACCGCCTCGTCGTCGCGCTCGGCTACAGCAA 436482 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 | | ||| || | |||||||| | || ||||||||||| ||||| || || || | Sbjct 436481 AATCTACCACGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGGC 436422 Query 243705 TAACTTCTTCGAAAAGCGTGTCAG 243728 ||||| ||||| ||| ||||| Sbjct 436421 CAACTTTTTCGAGTCGCGCGTCAG 436398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879759778950