Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 298 7e-76 seq4 140 4e-28 seq2 122 1e-22 >seq5 Length=3690501 Score = 298 bits (330), Expect = 7e-76 Identities = 1122/1740 (64%), Gaps = 35/1740 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| || || |||||||| || |||||||| | || | |||||||| | Sbjct 3209089 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTG 3209148 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | || |||| | || | | | | | ||| | || || || ||||||||| Sbjct 3209149 AGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATGAAG 3209208 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 |||||| || || || | ||||| || |||| | || ||||| ||||| || Sbjct 3209209 GCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTTG 3209268 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGAGCCACCCG---C 113832 |||| | ||| || || || ||||| ||| || | | |||||||| ||||||| | Sbjct 3209269 TAGATGGACTTGATGTCCTCGGGGAT-TCCGGGAATGTGCTGGATGGAACCACCCGAGGC 3209327 Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 |||| ||| | |||||| || | ||||||||||| || |||| || | Sbjct 3209328 AATGAC---GAGCTGCTTCATGTCATCGTCCCAGAGACCAAGGTTGATGAGGTCACGGAG 3209384 Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 ||| | | | ||| || || ||||||| |||| || | | |||| | Sbjct 3209385 GAGCCAGGGGCA--GACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATC 3209442 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| |||||||||||||| || || | || || | ||| ||||| |||||| Sbjct 3209443 GAGGTGTAGGGCTCAAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGC 3209502 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| || | ||||| ||| |||| ||| | | ||| | ||| || Sbjct 3209503 ATGGGGGCAACAAGAAGCGAGTTGCGGACACCGTGCTGGGCAATCTTCTGGCGGAGCTCG 3209562 Query 114071 TCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| | || | | | | | || ||| | |||||||| || | || | Sbjct 3209563 TCCCAGTTCCAGAGGTCGGTGGGGACGCGGCC--CCAGAGGTCAAACTGAAGCTTGCCCT 3209620 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 | || ||||| ||||| | | ||| ||| | | |||| ||| | Sbjct 3209621 GCGAAATGGGCGAGCCCTCGTACGAGGGGTACTTGCCAAGTTCGACGGCCATCTCGCACG 3209680 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGC-GAGCATTCATTGCCTTGGCC 114247 || ||||||||| ||||| || || |||||||| || ||| || | | || Sbjct 3209681 ACGACTCGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTTGAGG-TTGAGCTCACGAGCA 3209739 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 || || ||||| | | ||| || || | || || ||||| ||||||||| Sbjct 3209740 GCGGGCGAGTCAAAGGGCATGCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACCG 3209799 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAA 114364 || || | ||||| || | ||| || || || || ||| | |||| || | Sbjct 3209800 AGACCGACGGGGCGGTGGCGCATGTTCGAGTTCTTGGC---CTCAATGACGGGGTAGTAG 3209856 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||| || | | || || |||||||||||||| || || || || ||||| Sbjct 3209857 TTGCGCGAGATGACGCAGTCGAGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTC 3209916 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | | || | ||| |||| | |||| | ||| ||||| || || || || Sbjct 3209917 TTAAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGG 3209976 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || || || | ||| || ||| |||||| ||||| || || || | || || Sbjct 3209977 TTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGAC 3210036 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 ||| |||||||| | || || || || ||||| ||| || |||||||| ||| Sbjct 3210037 GACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGC 3210096 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC 114663 ||| | || || ||||| || |||| || |||||| || ||||| | || | | | Sbjct 3210097 ATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCC 3210156 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 114723 | | | ||| | | | ||||| |||||||||| |||||| || |||||||| Sbjct 3210157 TTG-ATAGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTC 3210215 Query 114724 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT-CTGGGCAGAAGAGAGACCATTGAC 114782 ||| | | || ||||| || || || || | ||||| | ||| | ||| | || Sbjct 3210216 CTCAGAGTGGACGTCGGAGAGGCCGGG-GCATTCGGCGGGGCACATGAGGGTCCAGTCAC 3210274 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCC 114842 | | |||| |||||| ||||||||||||| | ||||||||| || ||||||| || | Sbjct 3210275 CGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCAC 3210334 Query 114843 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 114902 | |||| | || || | || || || || | || | ||||| | || ||| | Sbjct 3210335 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCGG 3210394 Query 114903 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---ACCAGCCTGGTTTA 114959 ||||||| || || ||||| | || | | || || |||| |||||| | Sbjct 3210395 CGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGA 3210454 Query 114960 CATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 115019 | || | || || || | | | || ||||| || | |||||| | ||| | ||| | Sbjct 3210455 CGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGT 3210514 Query 115020 TTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACC 115077 | || || ||| ||||| | | |||| | | | |||||||| | ||| ||||| Sbjct 3210515 TGGTGCCGGCAATGTACGAGCCCT--TGGCACGAATGTTGTGGATGTGGAGACCGATACC 3210572 Query 115078 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGA 115137 || || ||| ||||| || ||||| | ||||| || ||||||| ||||| || || Sbjct 3210573 GCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAGA 3210632 Query 115138 GTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTT 115197 ||| |||| | |||| |||||||| |||||| || || || ||||| ||||| Sbjct 3210633 GTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTT 3210692 Query 115198 GAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAA 115257 ||||||||| || | |||||| | || || | ||||| | ||||||||| | Sbjct 3210693 GAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAAT 3210752 Query 115258 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| ||||| || ||||| |||||||||||||| ||||||| ||||| ||||| Sbjct 3210753 GACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATGTGCTGGGG 3210812 >seq4 Length=4180124 Score = 140 bits (154), Expect = 4e-28 Identities = 311/459 (68%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||||| || || ||| |||||||||||| | ||| || | | ||| | Sbjct 54572 CTTGGCGTAGGCCGAGACTCGCGACTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCAT 54631 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGA 125870 ||||||||| || || ||||| | ||||| | || | | | || | | || Sbjct 54632 CTCCATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTTTCCGAGGGCGAC-GA 54690 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 | ||||| || | ||| |||||||||||| |||| || |||||| || |||| Sbjct 54691 GCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAATGA 54750 Query 125931 GGTTACATGGGA-GCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | ||| |||| | || || || |||| ||| |||||| | || || ||| | | Sbjct 54751 GCG-ACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATG 54809 Query 125990 ATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGC 126048 || || |||| ||| || | | ||| | || | ||||||| ||| Sbjct 54810 ATCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAG-GTGTGTGAAGAGGAGACAGGC 54868 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 ||| || |||||||||||||||||| |||||||| || || |||||| ||||| || Sbjct 54869 AAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGG 54928 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| || |||||||| | |||||| |||| || || |||||||||||||| || Sbjct 54929 CATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACC 54988 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||| || || || |||| ||| |||||||| || || Sbjct 54989 CTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA 55027 >seq2 Length=4873547 Score = 122 bits (134), Expect = 1e-22 Identities = 245/356 (69%), Gaps = 13/356 (4%) Strand=Plus/Plus Query 125917 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCAC 125976 ||| || ||||| || ||| |||||||| ||| || ||| |||| ||||| || || Sbjct 436584 GTTGATGCCGATCAGCGCACAGGGGAGCGCATCCGTGAGAAACTCCTTTTCAATCTCGAC 436643 Query 125977 GGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAA--GTCTTG 126034 || || || | ||| ||| | |||| || | || ||||| | | | | Sbjct 436644 CGCCTCGCGGATAATGTTGTGCACCTCGTCCTCCGAGCACCGATGGCGCAGATGGCCATA 436703 Query 126035 AAG--AGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCG 126092 || || |||| |||| || ||| | |||||||| || |||||||| || || | Sbjct 436704 CAGCAAG---CACG-CAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTTG 436759 Query 126093 AGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAAC 126152 | ||| ||| || |||| || || |||||||| | |||||||||||| ||| || | Sbjct 436760 AAAAGGTCAGACCCCGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCAAACGAGC 436819 Query 126153 CCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG 126212 | || |||||||| ||||| |||||||| ||||||| |||||| || ||| || Sbjct 436820 CGGAAAAGAAGATGCCCTCGACACACGCAAACGCAATCAGACGC-GTGC---GGAACGGC 436875 Query 126213 ACTTTGT-GTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 | | || | || | |||| |||||| | ||||||||| |||||||||||| Sbjct 436876 ATCTCGTCGGTAATGTATTTCAGCGCCCAGTCGGCCTTTTTCCGGATACACGGGAC 436931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353473062360