Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq1 96.9 4e-15 >seq4 Length=4180124 Score = 114 bits (126), Expect = 1e-20 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| || || || |||| || |||||||| |||||||| Sbjct 22948 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAA 22889 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 22888 AATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTGA-CG 22831 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| || || || || | |||||||| |||||||| | ||||| Sbjct 22830 TTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTG 22771 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 22770 ACGAAGATCTGCAT 22757 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || | || || |||||||| || ||||| Sbjct 22720 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 22661 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 22660 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22602 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| || ||||| ||||| || || ||||| | Sbjct 22601 TGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGA 22542 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 22541 CGAAGATCTGCAT 22529 >seq1 Length=5948321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 3541730 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 3541671 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 42149 |||||| || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 3541670 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCC 3541612 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 || ||||| |||| |||||||| |||||||| || ||||| || Sbjct 3541611 GAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTAAC 3541565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 4244179 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 4244120 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 42149 |||| | || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 4244119 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCC 4244061 Query 42150 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| |||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 4244060 GAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212684567280