Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5 342 5e-89 >seq5 Length=3690501 Score = 342 bits (378), Expect = 5e-89 Identities = 1124/1731 (65%), Gaps = 72/1731 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| || || ||| |||||||||||| || | |||| | Sbjct 3210884 TACAACTACTTTGGCTTCAAGACCCTTGAGCGTTCGTACCTCCTCCGCATCGGCGGCAAG 3210825 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || || || | ||||| ||| | ||||| || |||||| | || Sbjct 3210824 GTCGCCGAGCGTCCCCAGCACATGATTATGCGTGTCTCGATCGGTATCCACGGCGAGAAC 3210765 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCC 93894 || || || | | | | || |||| ||| | | || |||| ||| Sbjct 3210764 ATTGAAAAGGTCATTGAGACCTACAACCTCATGTCGGA---GCGTTACTTTACCCACGCC 3210708 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||||| |||||||| || ||||| || |||||||| ||||| ||||| | Sbjct 3210707 TCGCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTC 3210648 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| |||||| || ||| || | ||||| |||||| ||| || ||| Sbjct 3210647 GCCATGAAGGACGACTCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATC 3210588 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || ||||| || ||||| || | ||||||| ||| || ||| Sbjct 3210587 TCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATTCGTGCCAAGGGCTCGTAC 3210528 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||| ||||| ||| ||| ||||| ||||||| |||||||| | || | || Sbjct 3210527 ATTGCCGGCACCAACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCT 3210468 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || ||||| |||||||||||| | | | ||| | || || |||| ||| Sbjct 3210467 ACTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTC 3210408 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 |||||||||||||| || || | ||| ||||||| || |||||||||||||| || Sbjct 3210407 GAGCCCTGGCACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAG 3210348 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | |||||||||||||| |||||| | | ||||| || |||| || Sbjct 3210347 GAGGTTCGCGCCCGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGT 3210288 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||| || | ||||| || | || ||| ||||| ||||| || |||||| Sbjct 3210287 GTCGAGGCTGACGGTGACTGGACCCTCATGTGCCCCGCCGAATGCCCCGGCCTCTCCGAC 3210228 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG---------CAGGGC 94425 || | | ||| || || | |||| |||||| | ||||| Sbjct 3210227 GT---------CCACTCTGAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGTGAGGGC 3210177 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 |||| | | ||| ||| | ||| |||||| ||| | || | || | ||| Sbjct 3210176 AAGGGCCGCAAGACTATCAAGGCTCAGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACT 3210117 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| ||| |||| ||| | | ||||||| ||| |||| |||||||||||||||| Sbjct 3210116 GAGACTGGTGGCCCCTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAG 3210057 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||||||| |||||| || || || ||||| |||||| ||||||| || | || Sbjct 3210056 CACCTCGGCACCATCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCC 3209997 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GA 94661 |||||| |||| || || ||||| | ||| || ||| | | || || ||| || Sbjct 3209996 GACGAGGTTGCCGTCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGT-CGACTTTGA 3209938 Query 94662 TGCCTACACGTCTACTGCTTCGTTCG-ATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGA 94720 | ||| |||| ||| | | | || | ||| || || |||| Sbjct 3209937 GAACGGCAC--CTACGACTT--TAAGAAGCTCCACGAGATT----AC-------CAAGGT 3209893 Query 94721 TG--GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 || | |||||| || | || ||| |||| |||||||||| ||||| | Sbjct 3209892 TGTCACCAAGAACCTCGACTGCGTCATCTCGCGCAACTACTACCCCGTCATTGAGGCCAA 3209833 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 |||||| ||| || || || ||| |||| |||| ||||||||| | || ||||| | Sbjct 3209832 GAACTCGAACATGCGCCACCGCCCCGTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTT 3209773 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACAT 94895 || | || |||||| ||||| | | ||| || || | || | || || Sbjct 3209772 CATGGCTCTCCGCATGCCCTTTGACTC-GCC--CGCTGCTCGTGAGCTCAACCTCAAGAT 3209716 Query 94896 ATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGG 94955 || || | ||| || ||| ||| | | || | | ||||| ||| || Sbjct 3209715 CTTTGAGACCATCTACCACGCCGCCCTCGAGTCGTCGTGCGAGATGGCC--GTCGAAC-- 3209660 Query 94956 CGGGCCA-CACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACC 95014 ||| | || |||| | || |||||| | ||||||| ||||||| |||| Sbjct 3209659 TTGGCAAGTACCCCTCGTACGAGGGCTCGCCCATTTCGCAGGGCAAGCTTCAGTTTGACC 3209600 Query 95015 TCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATG-TTATC 95073 ||||||| ||| | | || | ||||||| | || ||| | || | || | Sbjct 3209599 TCTGGGGCCGCGTCCCCACCGACCTCTGGAACTGGGACGAGCTCCGC-CAGAAGATTGCC 3209541 Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 | |||||||| ||| |||| ||||| |||||||||||||| ||||| || ||||| Sbjct 3209540 CAGCACGGTGTCCGCAACTCGCTTCTTGTTGCCCCCATGCCCACTGCCTCGACCTCGCAG 3209481 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 || || ||| ||||||| || || |||| |||||| | | ||| | || || Sbjct 3209480 ATTCTCGGCTGGAACGAGTGCTTTGAGCCCTACACCTCGATGCTCTACTCGCGTCGTGTC 3209421 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGT 95253 ||| | || || |||| ||| || | ||||| || ||||| | || ||| Sbjct 3209420 CTCTCGGGTGACTTCCAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATCAACCTTGGT 3209361 Query 95254 GTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCC---AACGGCTCCGTCCAGAAC 95310 | ||| ||| | | || ||| || || | ||| || ||| ||||| || Sbjct 3209360 CTCTGG---GACGATGACATGAAGCAGCTCGTCATTGCCTCGGGTGGTTCCATCCAGCAC 3209304 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC-- 95368 || || ||| || |||||||||||| | |||||||||| || |||||||| ||| Sbjct 3209303 ATTCCCGGAATCCCCGAGGACATCAAGTCCATCTACAAGACTGTCTGGGAGATTTCGCAA 3209244 Query 95369 -AGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || ||| | | |||| || |||| ||| || |||||||| |||| Sbjct 3209243 AAGGCCGTCA---TTGACCTTGCCGCCGACCGTGGAGCCTTCATCGACCAG 3209196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723094871320