Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq1 84.2 2e-11 >seq4 Length=4180124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 238/356 (67%), Gaps = 19/356 (5%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| || || ||| ||||||| | || ||||| ||||| || || ||||| ||| Sbjct 54931 ATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGAC 54872 Query 52542 TTTGCGTGCCTCTACTACA-AGACG--CGC-GT-GACCGAAAA---ATTGGATTCGGACA 52593 ||||| || ||| || || | || ||| || | || | | ||| |||| Sbjct 54871 TTTGCCTGTCTCCTCTTCACACACCTCCGCCGTCGTCCCCACCCCGACCTCATT--GACA 54814 Query 52594 CGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGC 52653 |||| | ||||||||| || || || ||||||| | || | || | Sbjct 54813 AGATCAT---------CAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTC 54763 Query 52654 TGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGG 52713 | || || ||| | ||||||||||| ||||||| ||||||| |||||||| | Sbjct 54762 TTCCCGTGTCGCTCATTGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTTTGTCG 54703 Query 52714 CGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTG 52773 | || |||||| | || ||||| | ||| | |||| || ||| || || | Sbjct 54702 CCGACCGTCTGCTCGTCGCCCTCGGAAACGAGAAGATGTACAACTCTACCAACCCCTTCG 54643 Query 52774 AGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 | |||||| | | || ||||| |||||||| ||||||| |||||| ||||||| Sbjct 54642 ACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGAGTC 54587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| ||||||||||||||| Sbjct 22755 CCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 22696 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| |||||||| ||||| ||||| Sbjct 22695 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 22636 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | ||||| ||| Sbjct 22635 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 22576 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || ||||| || || || |||||||| Sbjct 22575 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 >seq1 Length=5948321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||||||| || || |||| |||| |||||||| ||||| || || || || || || Sbjct 4244157 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTT 4244098 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | ||||||||||||| || | Sbjct 4244097 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 4244038 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 || || || || || || || || |||||||||||||| Sbjct 4244037 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGC 4243999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262294544240