Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq1 118 1e-21 seq2 87.8 2e-12 >seq4 Length=4180124 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| | ||||| ||| || ||||| || || Sbjct 22725 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 22666 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| ||||||||||||||| ||| || |||| Sbjct 22665 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 22606 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | |||||| |||| ||| | || |||||||| ||||| Sbjct 22605 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGAGT 22547 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 22546 CTTGACGAAGATCTGCAT 22529 Score = 131 bits (144), Expect = 2e-25 Identities = 284/424 (67%), Gaps = 27/424 (6%) Strand=Plus/Minus Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218 ||| ||||| ||||||||||||| || || |||| || | | || | || Sbjct 54995 CGTTGAGGGTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGTGG 54936 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | | |||||||| ||||| || ||||||||| |||||| | ||||| || || ||||| Sbjct 54935 ACTCATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACAC 54876 Query 47279 CAACTTTGCCTGTCTCTACTACA-ACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCG 47337 | |||||||||||||| || || |||| | || ||| |||||| Sbjct 54875 CGACTTTGCCTGTCTCCTCTTCACACACCTCCGCCGT------------CGTCCCCACCC 54828 Query 47338 -----TCAGCGACATGTTTGCC---GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGA 47389 ||| |||| | | | || || ||| |||||| |||||| || |||| Sbjct 54827 CGACCTCATTGACAAGATCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGA 54768 Query 47390 GGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATT 47449 |||||| |||| || | | || |||||||| | ||| | ||||||| || || Sbjct 54767 GGCTCTTCCCGTGTCGCTCATTGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTT 54708 Query 47450 TGTCGCCGACCGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCACACCGAGAA 47506 |||||||||||| |||||||| || ||| | ||||| ||| || | || Sbjct 54707 TGTCGCCGACCGTCTGCTCGTCGCCCTCGGAAACGA---GAAGATGTACAACTCTACCAA 54651 Query 47507 TCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCG 47566 || ||||| |||||| | | || |||||| |||||||| ||||||| |||||| ||| Sbjct 54650 CCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCG 54591 Query 47567 CGTC 47570 ||| Sbjct 54590 AGTC 54587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| |||||| Sbjct 22953 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 22894 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| || || || ||||||||||||||| || ||| |||| Sbjct 22893 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 22834 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | | ||| || || | || | || ||||| |||| || Sbjct 22833 ACGTTG-TCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCCGTCAAGGT 22775 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 22774 CTTGACGAAGATCTGCAT 22757 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| || || || ||| || ||||| || || Sbjct 23228 CGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCGAGCTGCTTGCC 23169 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| |||||||| || || || ||||||||||||||| ||| ||| ||| Sbjct 23168 AGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 23109 Query 127036 GA-GTTGTTCGACGGTGTC 127053 | |||| |||| ||||| Sbjct 23108 AACGTTG-TCGATAGTGTC 23091 >seq1 Length=5948321 Score = 118 bits (130), Expect = 1e-21 Identities = 123/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || || || |||||||||||| Sbjct 4244156 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 4244097 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| ||||| ||| |||||||| | ||| || |||| ||| | Sbjct 4244096 TCCTGGATCTTCGCCTTGACGTTGT-CGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 4244038 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || |||||||| || || || || |||||||||||||| Sbjct 4244037 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGC 4243999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || |||||||||||| Sbjct 3541707 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 3541648 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||||| | ||| || |||| ||| | Sbjct 3541647 TCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 3541589 Query 127078 CGTTTTGCCGGTCAGAGTTTTTAC 127101 || ||||| || || || || || Sbjct 3541588 GGTCTTGCCCGTGAGGGTCTTAAC 3541565 >seq2 Length=4873547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTT 47143 ||||||||| ||||| |||| |||||| |||| | | | || | || ||| | Sbjct 436914 AAAGGCCGACTGGGCGCTGAAATACATTACCGACGAGAT-GCCGTTCCGCACG--CGTCT 436858 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 ||| || || || ||||||||| ||||||| || ||| ||||||||||| || | Sbjct 436857 GATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTCTG 436798 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 | || | || |||||| || || || ||| |||||||| |||||| | || Sbjct 436797 GCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGA 436738 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTG 47290 ||| ||| |||||||| ||||||| || Sbjct 436737 CGAGGGCATGCACACCGACTTTGCGTG 436711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 ||||||| ||||| ||||| |||||||| |||| ||| || ||| || |||| Sbjct 436533 AGTACATGGAATTCGTCGCGGACCGCCTCGTCGTCGCGCTCGGCTACAGCAAAATCTACC 436474 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 || | | || || ||||| | ||| | ||| ||||| |||||||| ||||||||| Sbjct 436473 ACGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGGCCAACTTTT 436414 Query 47557 TCGAGAAGCGCGTCGGCG 47574 ||||| ||||||| ||| Sbjct 436413 TCGAGTCGCGCGTCAGCG 436396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500698956080