Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 269 3e-67 seq4 134 2e-26 seq2 125 9e-24 seq1 102 1e-16 >seq5 Length=3690501 Score = 269 bits (298), Expect = 3e-67 Identities = 1117/1741 (64%), Gaps = 37/1741 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||||||||| || || |||||||| || |||||||| | || | ||||| || | Sbjct 3209089 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTG 3209148 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || |||| | || | | | | | ||| | || || || ||||||||| Sbjct 3209149 AGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATGAAG 3209208 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||| || || || || | ||||| || |||| | || ||||| ||||| || Sbjct 3209209 GCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTTG 3209268 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATAGAGCCACCTG---C 115793 |||| | ||| || || || ||||| ||| || | | ||||| || ||||| | | Sbjct 3209269 TAGATGGACTTGATGTCCTCGGGGAT-TCCGGGAATGTGCTGGATGGAACCACCCGAGGC 3209327 Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 |||| ||| | |||||| || | ||||||||||| || |||| || || Sbjct 3209328 AATGAC---GAGCTGCTTCATGTCATCGTCCCAGAGACCAAGGTTGATGAGGTC----AC 3209380 Query 115854 G-AGGTGCTTATTGACA-ACAACA---AACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908 | ||| || | | || || || || ||||||| |||| || | | |||| Sbjct 3209381 GGAGGAGCC-AGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGC 3209439 Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968 | | ||||| |||||||||||||| || || | || || | || ||||| ||| Sbjct 3209440 ATCGAGGTGTAGGGCTCAAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTG 3209499 Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG 116028 |||||||| || | ||||| |||||||| ||| | ||| | ||| Sbjct 3209500 GGCATGGGGGCAACAAGAAGCGAGTTGCGGACACCGTGCTGGGCAATCTTCTGGCGGAGC 3209559 Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCT 116088 ||||||||| || | | | | | |||| | |||||||| || | || Sbjct 3209560 TCGTCCCAGTTCCAGAGGTCGGTGGGGACGCGGCCCCAGAGGTCAAACTGAAGCTTGCCC 3209619 Query 116089 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 116148 || || ||||| ||||| | | || ||| | | |||| ||| | Sbjct 3209620 TGCGAAATGGGCGAGCCCTCGTACGAGGGGTACTTGCCAAGTTCGACGGCCATCTCGCAC 3209679 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGC-GAGCATTCATTGCCTTGGC 116207 || ||||||||| ||||| || || |||||||| || ||| || | | || Sbjct 3209680 GACGACTCGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTTGAGG-TTGAGCTCACGAGC 3209738 Query 116208 CTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 116267 || || ||||| | | ||| || || | || || ||||| |||||||| Sbjct 3209739 AGCGGGCGAGTCAAAGGGCATGCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACC 3209798 Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAA 116324 ||| || | ||||| || | ||| || || || || ||| | |||| || | Sbjct 3209799 GAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCTTGGC---CTCAATGACGGGGTAGTA 3209855 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || | ||| || | | || || |||||||||||||| || || || || ||||| Sbjct 3209856 GTTGCGCGAGATGACGCAGTCGAGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTT 3209915 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | || | ||| |||| | |||| | ||| ||||| || || || || Sbjct 3209916 CTTAAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAG 3209975 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || || | ||| || ||| |||||| ||||| || || || | || || Sbjct 3209976 GTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGA 3210035 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 ||| |||||||| | || || || || ||||| ||| || ||||||||||| Sbjct 3210036 CGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAG 3210095 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623 ||| | || || ||||| || |||| || |||||| || ||| | | || | | Sbjct 3210096 CATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGC 3210155 Query 116624 CTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT 116683 || | | ||| | | | ||||| |||||||||| |||||| |||||||||| Sbjct 3210156 CTTG-ATAGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACT 3210214 Query 116684 CTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTAT-CTGGACAGAAGAGAGACCATTGA 116742 | ||| | || ||||| || || || || | || || | ||| | ||| | | Sbjct 3210215 CCTCAGAGTGGACGTCGGAGAGGCCGGG-GCATTCGGCGGGGCACATGAGGGTCCAGTCA 3210273 Query 116743 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 116802 || | |||| || ||| ||||||||||||| | ||||||||| || ||||||| || Sbjct 3210274 CCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCA 3210333 Query 116803 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 116862 || |||| | || || | || || || || | || | ||||| | || ||| Sbjct 3210334 CGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCG 3210393 Query 116863 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG---ACCAGCCTGGTTT 116919 |||||||| || || ||||| | || | | || ||| |||| |||||| Sbjct 3210394 GCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCG 3210453 Query 116920 ACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCA 116979 || || | || || |||| | | || ||||| || | |||||| | ||| | ||| Sbjct 3210454 ACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCG 3210513 Query 116980 TTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 || || || ||| ||||| | | |||| | | | ||||||||| | ||| |||| Sbjct 3210514 TTGGTGCCGGCAATGTACGAGCCCT--TGGCACGAATGTTGTGGATGTGGAGACCGATAC 3210571 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 | || || ||| ||||| || ||||| | ||||| || ||||||| || || || | Sbjct 3210572 CGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAG 3210631 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 |||| |||| | |||| ||||||||| |||||| || || || ||||| |||| Sbjct 3210632 AGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGT 3210691 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA 117217 |||||||||| || | |||||| | || || | ||||| | ||||||||| | Sbjct 3210692 TGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAA 3210751 Query 117218 AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGG 117277 ||| ||||| || ||||| |||||||| ||||| ||||||| ||||| |||| Sbjct 3210752 TGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATGTGCTGGG 3210811 Query 117278 G 117278 | Sbjct 3210812 G 3210812 >seq4 Length=4180124 Score = 134 bits (148), Expect = 2e-26 Identities = 312/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||||| || ||| ||| |||||||||||| | ||| || | ||| ||| | Sbjct 54572 CTTGGCGTAGGCCGAGACTCGCGACTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCAT 54631 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGA 127343 ||||||||| || || ||||| | ||||| | || | | | || | | || Sbjct 54632 CTCCATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTTTCCGAGGGCGAC-GA 54690 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 | ||||| || | ||| |||||||||||| |||| || |||||| || |||| Sbjct 54691 GCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAATGA 54750 Query 127404 GGTTACATGGGA-GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | ||| |||| | || || || |||| ||| |||||| | ||||| ||| | | Sbjct 54751 GCG-ACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATG 54809 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCT-TGAAGAGTTCCACAG- 127520 || || ||| ||| || | | ||| | || | ||||||| |||| Sbjct 54810 ATCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAG-GTGTGTGAAGAGGAG-ACAGG 54867 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 |||| || |||||||||||||||||| |||||||| || || |||||| || || | Sbjct 54868 CAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGG 54927 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| |||| || || || ||||||||||| | Sbjct 54928 GCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATAC 54987 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 |||| || || || |||| || ||||| || || || Sbjct 54988 CCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA 55027 >seq2 Length=4873547 Score = 125 bits (138), Expect = 9e-24 Identities = 162/222 (73%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| || |||||||| || || || ||| |||||| Sbjct 436714 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTTGAAAAGGTCAGACCC 436773 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||| || || |||||||| | |||||||||||| ||| ||||| || |||||||| Sbjct 436774 CGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCAAACGAGCCGGAAAAGAAGATG 436833 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 ||||| |||||||| ||||||| |||||| | ||| ||| | | || || Sbjct 436834 CCCTCGACACACGCAAACGCAATCAGACGCGTG----CGGAACGGCATCTCGTCGGTAAT 436889 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | |||| |||||| | ||||||||| |||||| ||||| Sbjct 436890 GTATTTCAGCGCCCAGTCGGCCTTTTTCCGGATACACGGGAC 436931 >seq1 Length=5948321 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 ||| |||| ||| ||||| ||||| | || | ||| || || || | | |||| Sbjct 2247864 CTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGT 2247923 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 | || | ||| || || | | || ||||||||| ||||||||||||||||| | || Sbjct 2247924 GGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGA 2247983 Query 12992 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051 |||| | || ||||||||| |||| ||||| ||| |||| ||| || || || Sbjct 2247984 ACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGT 2248043 Query 13052 CTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 ||| || || || || || | ||||| |||||| || || ||| ||||||| Sbjct 2248044 CTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507069629720