Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq5 129 9e-25 >seq2 Length=4873547 Score = 141 bits (156), Expect = 1e-28 Identities = 199/276 (72%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 159793 GTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGAC 159852 |||||| || | |||| | ||||||||| |||| ||||||||||| ||||||||||| Sbjct 436584 GTTGATGCCGATCAGCGCACAGGGGAGCGCATCCGTGAGAAACTCCTTTTCAATCTCGAC 436643 Query 159853 CGCTTCGGTCACAATCT-GCGAGACACGT--TCGTACCCCGGCTTGCCCAAAATGTGGTC 159909 ||| ||| | ||| | | | | ||| || | | | | | || || | ||| | Sbjct 436644 CGCCTCGCGGATAATGTTGTGCACCTCGTCCTCCGAGCACCGATGGCGCAGA---TGGCC 436700 Query 159910 CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTT 159969 | |||| | ||||||||||||| ||||| |||||||| || ||||||| |||||| Sbjct 436701 AT---ACAGCAAGCACGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTT 436757 Query 159970 GGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC 160029 || | | | || ||| |||| | ||| ||| |||||||| ||||| |||||||| | Sbjct 436758 TGAAAAGGTCAGACCCCGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCAAACGA 436817 Query 160030 ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||| ||| ||||| ||||| || ||||||||| Sbjct 436818 GCCGGAAAAGAAGATGCCCTCGACACACGCAAACGC 436853 >seq5 Length=3690501 Score = 129 bits (142), Expect = 9e-25 Identities = 437/671 (65%), Gaps = 10/671 (1%) Strand=Plus/Plus Query 204929 TGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTC 204988 ||||||||||| ||||||||||| | ||||||||| | |||||| || || || Sbjct 3210055 TGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTC 3210114 Query 204989 TCCATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTA 205047 || |||| | ||| |||||| ||| | | |||||| | ||| | Sbjct 3210115 TCAGTCTGGGCCTCG-AGAATGGCAAACCAGAGCTTCTGAGCCTTGATAGTCTTGCGGCC 3210173 Query 205048 CATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCAT 205107 | | || | | |||||| ||| ||| || ||| |||| || | || ||||| Sbjct 3210174 CTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGA 3210233 Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCA--CATCTGATCGTCTTTCACCCTC 205165 || || || |||| ||| ||||| || | ||| || | || | | || | | Sbjct 3210234 GAGGCCGGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCG--TCAGCCTCGACACGC 3210291 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 ||| || ||||| |||||| ||| |||| || || |||||||| | || | || Sbjct 3210292 CTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCC 3210351 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAA 205284 | || ||||||| | ||| || ||| || | | ||||||||||| ||||| | Sbjct 3210352 TTGCCGTGGTTCTTGCGGAGGTCGAGG-AAGTCGAAGACATCGGCGTGCCAGGGCTCGAG 3210410 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | ||| | || || || | |||||| ||||||||||| || |||| | || Sbjct 3210411 GTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTAGC 3210470 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 || | | | || ||||| || || | |||||| | | ||||| |||| | ||| Sbjct 3210471 GTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTA 3210530 Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464 |||||| | || | | |||| |||| || || ||||| | | ||||| ||| Sbjct 3210531 CGAGCCCTTGGCACGAATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGAT 3210590 Query 205465 CTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 ||||||||| ||||| |||||| ||||||||| | || || |||||| || | | Sbjct 3210591 CTGGGCGCAGGTCTTG-AGAGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCATGGCGA 3210649 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 | || ||||||| | || || || | ||| || |||| |||||| || || || Sbjct 3210650 CGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGG 3210709 Query 205584 CGTGGCTGAAG 205594 ||||| | ||| Sbjct 3210710 CGTGGGTAAAG 3210720 Score = 104 bits (114), Expect = 4e-17 Identities = 324/494 (66%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| |||||||| | | ||| | | | | || ||||| || || || Sbjct 3209049 GTCGACGGTGAACTGGATGGCGTTGGCCGAAGGGCGGGTGCGGAGGTAGTAGATACCAGT 3209108 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGGGT 203960 ||| || || || ||| ||||| | |||||| |||| || | | ||| ||| | Sbjct 3209109 CTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTGAGCTGCGAGAACGACGGGTT 3209168 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 ||| | ||||||||| || ||||| ||||||||| ||||| || || || ||||| Sbjct 3209169 -GGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATG-AAGGCTCCACGGTCGGCGGCA 3209226 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 | | || | || ||| |||||||||||||| || |||||| | | | || ||| Sbjct 3209227 AGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTTGTAGATGGACTTGATGTCC 3209286 Query 204080 TGAGGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | |||| | || || ||| || || ||| || | | | | Sbjct 3209287 TCGGGGA----TTCCGGGAATGTGCTGGATGGAACCACCCGAGGCAATGACGAGCTGCTT 3209342 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || || |||| | || | |||| || || || | || |||| || || Sbjct 3209343 CATGTCATCGTCCCAGAGACCAAGGTTGATGAGGTCACGGAGGAGCCAGGGGCAGACGAC 3209402 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| ||||| || || || || | || | | | || | |||| | || || || Sbjct 3209403 CTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCAAAGCA 3209462 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||| ||||| |||||| | ||| ||| ||||||||||| || | || || || Sbjct 3209463 CTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACAAGAAGCGA 3209522 Query 204316 GTTGCGCACACCGT 204329 |||||| ||||||| Sbjct 3209523 GTTGCGGACACCGT 3209536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155031029520