Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq2 111 2e-19 seq1 105 7e-18 >seq4 Length=4180124 Score = 138 bits (152), Expect = 1e-27 Identities = 318/475 (67%), Gaps = 8/475 (2%) Strand=Plus/Plus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAG 132722 |||||| || |||||||||| | |||||| ||| | | |||| || ||||||| Sbjct 54635 CATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTTTCCGA---GGGCGACGAG 54691 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCA 132781 ||| | |||||| || ||||| ||||| || ||||| | | || | | | || | | Sbjct 54692 CAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATG-CCAATGA 54750 Query 132782 GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 | ||| || || || |||||||| || ||||| || ||| || || ||| || Sbjct 54751 GCGACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATGA 54810 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 | | || | | | | | || || | | || |||| | | || |||| Sbjct 54811 TCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAGGTGTGTGAAGAGGAGACAGGCAA 54870 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 ||||| || | |||||||| | || ||||| |||||| ||| || | ||||||| Sbjct 54871 AGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCA 54930 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||| || || || |||||||| || || | |||||| ||||| ||||||| |||| Sbjct 54931 TGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACCCT 54990 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 | ||||| || || || | |||||||| |||| | | | | | |||||||| Sbjct 54991 CAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGACGAGCTCTCGTCCGAGATCCAGC 55050 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 | || ||||| |||||||| | |||| ||| || || || || ||||| || || Sbjct 55051 GGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTTGAA 55105 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| ||| |||| |||||| | | Sbjct 22529 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCG 22588 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 22589 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 22647 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 22648 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 22707 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || |||| || ||| Sbjct 22708 CATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGT 22744 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| |||||||| | || || ||| | || Sbjct 22757 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 22816 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || ||| | ||||| Sbjct 22817 GACACCATTGACAACG-TCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 22875 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || |||| ||||||||| |||||||| Sbjct 22876 GCAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAA 22935 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 22936 CATCCAGAAGGA 22947 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || |||||||| | || |||||| | |||||| | | |||| |||| Sbjct 23052 CTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGTCCGACACTATCGACAACG-TTAA 23110 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| |||||| | ||||| ||||| || || | || || Sbjct 23111 GGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGG 23170 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | || ||| | ||||||||||||||| ||||| ||||||| Sbjct 23171 CAAGCAGCTCGAGGATGGACGTACCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCT 23230 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || | || || ||| | | || |||| Sbjct 23231 TCACCTTGTCCTCCGTCTCCGTGGTGGCC 23259 >seq2 Length=4873547 Score = 111 bits (122), Expect = 2e-19 Identities = 226/333 (68%), Gaps = 16/333 (5%) Strand=Plus/Minus Query 107480 AATGCCGCACGCGAGCCGGC-----CGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGG 107534 |||| ||| ||| ||||||| | || | || ||||||||||||| | | | Sbjct 4512277 AATGACGC-CGC-AGCCGGCACGCGCACCGGCGTGGCCGGTGGTCTTGGAGTCGGTCTCG 4512220 Query 107535 TCGGTGAGGCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATGCTG 107594 | | | |||| || ||||| || | | ||||||||| | | ||||||||| |||||| Sbjct 4512219 TTGCCGCGGCCGAGGTCGTCAGTGCCGGCGTGCACGACGATCCCCCGTCCGATAATGCTG 4512160 Query 107595 TGCGGGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGG 107654 || ||||| | | | ||| ||| || ||| | || || || || || | Sbjct 4512159 CGCTTGCCGTGGAGACGGAGGACCTTGTCGGTAAAGTCGATCTTGGCGA---CGCCGTTG 4512103 Query 107655 CCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCG 107714 | ||| || | |||||| |||||||||||||| | | | | || | ||||||||| Sbjct 4512102 GCGTCCGTCTCAATGTTGCCGAGGTCGCCGACGTGGCGGTTGCGGTCGCCCGGCGCGCCG 4512043 Query 107715 TGGTCGCGCTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCG----- 107769 || | ||||| ||||||||| || |||||| ||| |||| ||| || || Sbjct 4512042 TGCTGACGCTTGTACGGGTTGAAGTGGCCGCCGGTCGAGAGGCAGTCGTGGCCCGACGAA 4511983 Query 107770 -CGTCGCCGAACTCGTGCACGTGGAAGCCGTGC 107801 |||||| |||||||| | ||||||||||||| Sbjct 4511982 ATGTCGCCAAACTCGTGGATGTGGAAGCCGTGC 4511950 >seq1 Length=5948321 Score = 105 bits (116), Expect = 7e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCA 38314 || || || ||||||||||| ||||||||| |||| || ||| | | |||| | | | Sbjct 3541565 GTTAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 3541624 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || | || |||| ||||| ||||| || ||| ||||||| ||||| ||||| Sbjct 3541625 AACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCAT 3541683 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 3541684 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 3541730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 107663 CTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCG 107722 ||||| |||||| |||||||||||||| | | | | || ||||||||||| | ||| Sbjct 3105479 CTTGACGTTGCCAAGGTCGCCGACGTGGCGGTTGCGGTCGGTCGGCGCGCCGTGCTGGCG 3105420 Query 107723 CTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCG------CGTCGCC 107776 ||| |||||||| || ||||| ||| |||| || || || ||||||| Sbjct 3105419 CTTGTAGGGGTTGAAGTGGGGGCCGGTCGAGAGGCAGTCGAGGCCCGACGAGACGTCGCC 3105360 Query 107777 GAACTCGTGCACGTGGAAGCCGTGC 107801 ||||||||||| |||||||||||| Sbjct 3105359 AAACTCGTGCACATGGAAGCCGTGC 3105335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172693713280