Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 152 7e-32 seq2 96.9 4e-15 >seq4 Length=4180124 Score = 152 bits (168), Expect = 7e-32 Identities = 174/233 (75%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| ||||||| ||| | ||||| | ||||| |||||||| || || Sbjct 3469830 TTCATGTCGGACTGGACCTCAGCGTCGGCGAACTTGCGGCCGATCAGACGCTTGGCGTCG 3469889 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | |||||||||||| |||||||| || ||||| || || ||||| Sbjct 3469890 AAGACAGTGTTGTAGGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCACCAATGAGACGC 3469949 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 ||| | | || |||||||| || || ||||| || || || || |||||||| || Sbjct 3469950 TCAGAGT---CGGTGAACGCGACATAAGAGGGGGTGGTACGGTTACCCTGGTCGTTGGCG 3470006 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || ||||| ||||||||||| ||||||||| |||| ||||| || || || || Sbjct 3470007 ATGATTTCAACGCGGTCGTTCTGCCAGACGGCGACACACGAGTAGGTGGTACC 3470059 >seq2 Length=4873547 Score = 96.9 bits (106), Expect = 4e-15 Identities = 208/309 (67%), Gaps = 14/309 (5%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC- 7515 || || || |||||||| | ||| || || || ||||| ||||| ||||||| ||| Sbjct 1994286 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTCGACTTGACCTCAAAGACACCC 1994227 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG---AG 7572 | || || | | | | || || || || || ||||| || ||||| | | | | Sbjct 1994226 TTCTGCA-TCTCGAGGATGGACACGTCGAAAGTTCCACCTCCAAGGTCGTAGACGGCAAT 1994168 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| || |||| |||| ||||| ||||| |||| || || || || || Sbjct 1994167 GACGGCCGAGTCGT---------TCTTGTCGAGGCCGTAGGCGAGGGCGGCGGCGGTGGG 1994117 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || | ||| ||| | ||||||||||| | | || || || || || || Sbjct 1994116 CTCGTTGATGACACGGAGAACCTCGAGGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTG 1994057 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| ||||| || | ||| |||| | |||| ||| || Sbjct 1994056 ACGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCGTGCTTGACGGGCTTGCC 1993997 Query 7753 GAGATACGA 7761 ||| ||||| Sbjct 1993996 GAGGTACGA 1993988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132665034280