Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 203 4e-47 seq4 141 1e-28 seq1 120 4e-22 seq2 105 8e-18 >seq5 Length=3690501 Score = 203 bits (224), Expect = 4e-47 Identities = 685/1058 (65%), Gaps = 33/1058 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| ||| ||||||||||||| || || | ||||| || Sbjct 3210812 CCCCAGCACATGATTATGCGTGTCTCGATCGGTATCCACGGCGAGAACATTGAAAAGGTC 3210753 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| || || | |||||| | || ||||||||| Sbjct 3210752 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTTACCCACGCCTCGCCTACCCTCTTC 3210693 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||||| ||||| || ||||| | || | ||||| || Sbjct 3210692 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAAGGACGAC 3210633 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | ||||| |||| |||||||| || ||||| ||||| ||| || || Sbjct 3210632 TCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 3210573 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAA 111909 |||||||| | |||||||| | | | |||| | | ||||| ||| || || | Sbjct 3210572 GGTATCGGTCTCCACATCCACAACATTCGTGCCA--AGGGCTCGTACATTGCCGGCACCA 3210515 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || | || | ||||| | || ||||| || | | |||| || || || || | Sbjct 3210514 ACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCTACTGCTCGTTACG 3210455 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||| | | || | | || |||| || ||||| |||| Sbjct 3210454 TCGACCAGGGTGGTAACAAGCGCCCC---GGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3210398 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | || ||||| || | || ||||| || | ||||||| || Sbjct 3210397 ACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 3210338 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || ||||||| ||| |||||||| | || |||||||||| | | || |||| Sbjct 3210337 CCCGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTG 3210278 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 || | ||| | ||| | || || | | || || ||||| |||||||| | | | Sbjct 3210277 ACGGTGACTGGACCCTCATGTGCCCCGCCGAATGC-CCCGGCCTCTCCGACGTCCACTCT 3210219 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GA 112257 ||||||||||| || |||||| |||||||||| || |||| | || || Sbjct 3210218 GAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGTGA-----GGGCAAGGGCCGCAAGA 3210164 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | | | || | || | | ||| || |||||| || | || || ||||||||| Sbjct 3210163 CTAT-CAAGGCTCAGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGC 3210105 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| ||||| |||| ||| || || || | | || Sbjct 3210104 CCCTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACC 3210045 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 |||||| ||||||||||| || || || | || | | | | || ||| || Sbjct 3210044 ATCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCC 3209985 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || ||||| || || || || ||||| | ||| || |||| || | Sbjct 3209984 GTCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTAC 3209925 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | | || |||||||| |||| || |||||| || ||||| || | || || Sbjct 3209924 GACTTTAAGAAGCTCCACGAGATTACCAAGGTTGTCACCAAGAACCTCGACTGCGTCATC 3209865 Query 112557 GATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 | || | ||||||| ||||| || || || || ||| | ||||| || Sbjct 3209864 TCGCGCAACTACTACCCCGTCATTGAG---GCCAAGAACTCGAACATGCGCCACCGCCCC 3209808 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 | |||||||||||||| ||||| || || | ||||| Sbjct 3209807 GTCGGTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 3209770 >seq4 Length=4180124 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || |||||||| ||| | || ||||| |||||||||||||||||||| || || Sbjct 55027 TCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCG 54968 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||| | | || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 54967 TTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCTCCAAC 54908 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| |||||| || ||||| Sbjct 54907 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 54867 >seq1 Length=5948321 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 |||||| | |||||||||||| || | |||| |||||| || || | | || Sbjct 2247864 CTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGT 2247923 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || ||||| || |||||| || || ||||| ||||||||||||||||| | | Sbjct 2247924 GGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGA 2247983 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 |||| | || ||||||||| || | ||||| || |||| ||| |||||||| Sbjct 2247984 ACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGT 2248043 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||| ||||| || ||| | ||| | |||||| || ||||||||||| || Sbjct 2248044 CTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 >seq2 Length=4873547 Score = 105 bits (116), Expect = 8e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 102250 || ||||||||||| ||||| |||||||| || || || || |||| | |||| ||||| Sbjct 436853 GCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTT-TGCGGCGATTTTCTGGCT 436795 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 ||||||||| || || |||| ||||| ||| || |||||||| ||||| || ||||| Sbjct 436794 CAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGACGA 436735 Query 102311 GGGACTCCACCAAGAGTTTGCG 102332 ||| | ||| || |||||| Sbjct 436734 GGGCATGCACACCGACTTTGCG 436713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742268092240