Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 seq1 161 1e-34 seq4 93.3 5e-14 >seq5 Length=3690501 Score = 206 bits (228), Expect = 3e-48 Identities = 617/938 (66%), Gaps = 27/938 (3%) Strand=Plus/Plus Query 110104 TCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCA 110163 || || |||||||| ||||||||||| | |||||| || |||||| ||| || | Sbjct 3209779 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGAG-TTCTTGGC 3209837 Query 110164 GTTTCT-ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 | | |||||||| ||||||| |||||| | | ||| ||||| || ||| ||| Sbjct 3209838 CTCAATGACGGGGTAGTAGTTGCGCGAGATGACGCAGTCGAGGTTCTTGGTGACAACCTT 3209897 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGG 110282 || || || ||||| || | | ||| | || |||| | |||| | || Sbjct 3209898 GGTAATCTCGTGGAGCTTCTTAAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGG 3209957 Query 110283 GAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAAT 110342 ||| ||||| || ||||| ||||| || | | |||||| | | | ||| || | ||| Sbjct 3209958 GAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAAT 3210017 Query 110343 TTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT 110402 || || || | |||||| ||| ||| || | || || ||| || || ||| ||| Sbjct 3210018 CTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTT 3210077 Query 110403 GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 | || ||||| ||||||||| | ||| |||||| || ||||| | || ||||||||| Sbjct 3210078 GGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGC 3210137 Query 110463 CTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTC---CTCGTA 110516 ||| | | || | || || ||| | ||| | |||| |||| |||||| Sbjct 3210138 AAACCAGAGCTTCTG-AGCCTTGATAGT----CTTGCG-GCCCTTGCCCTCACGCTCGTA 3210191 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GT 110575 ||| ||| | ||||||| |||| || || || || || || || || | Sbjct 3210192 CTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAG-GCCGGGGCATTCGG 3210250 Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635 |||| || | ||||| ||| | || | |||| || | | ||||||| ||||| | | Sbjct 3210251 CGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGA 3210310 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 |||| | || |||| ||||||||| ||| |||| || | || ||||| ||| | Sbjct 3210311 TCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGA 3210370 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC-- 110753 | || | ||||| | || ||| | |||||| || ||||| |||| || | || || Sbjct 3210371 GGTCGAGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGG 3210430 Query 110754 ----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCA 110809 ||| || || |||||| || || || || || || | | || | | ||||| Sbjct 3210431 GGCGCTTGTTACCAC---CCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCA 3210487 Query 110810 TAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAA 110869 | || | || || | || | || || || || ||| || |||||||||| Sbjct 3210488 TGGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAA 3210547 Query 110870 TGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTG 110928 ||| |||||| || | ||| ||||| || || ||| || || || || ||| || Sbjct 3210548 TGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCT-TG 3210606 Query 110929 AGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 || || | || || || ||||| || || |||| |||| | || ||||| || ||| Sbjct 3210607 AGAGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGAC 3210666 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 ||||| || | || || || || |||||||| ||||| Sbjct 3210667 ATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGG 3210704 Score = 91.5 bits (100), Expect = 2e-13 Identities = 293/451 (65%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| || || || ||||| || ||||| || |||||| |||| | ||||| |||| Sbjct 3209088 GCGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGT 3209147 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 ||| | || | | ||| | | | | ||| | |||||| ||||| |||||||| Sbjct 3209148 GAGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATGAA 3209207 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 ||||| || || || | ||| |||| |||||| ||| |||||||||||||| Sbjct 3209208 GGCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTT 3209267 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACG-ATGTTTTGAATAGAGCCACCAGCCT 109645 ||| | |||||| || ||||| || ||| | |||| || || || ||||| | Sbjct 3209268 GTAGATGGACTTGATGTCCTCGGGGAT-TCCGGGAATGTGCTGGATGGAACCACCCGAGG 3209326 Query 109646 TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 | | ||| | |||||| || | ||||||||| | || |||| |||| | Sbjct 3209327 CAATGACGAGCTGCTTCATGTCATCGTCCCAGAGACCAAGGTTGATGAG---GTCACGGA 3209383 Query 109706 GATGCTTGTTGACCACGAC---AAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | || | | ||||| || ||||| | || || || ||||| | | Sbjct 3209384 GGAGCCAGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATCG 3209443 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 |||||||| || || ||||| || ||| || || || | || || || ||||||| Sbjct 3209444 AGGTGTAGGGCTCAAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGCA 3209503 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 |||| || | ||||| ||| |||| ||| Sbjct 3209504 TGGGGGCAACAAGAAGCGAGTTGCGGACACC 3209534 >seq1 Length=5948321 Score = 161 bits (178), Expect = 1e-34 Identities = 351/516 (68%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| |||||||| || || || | || ||| || |||| ||| |||||| Sbjct 2247684 AATGTGACGGTCGAAACGTCCGGGACGCATGAGCGCAGGGTCGAGAACGTCGGGACGGTT 2247743 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 ||| | || | || |||||| || || |||||||||||| || |||||| Sbjct 2247744 GGTACCAGCGAGCACAACAATGTGCTCCTTGCTGCTGAAACCGTCCATCTCAACGAGAAG 2247803 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC------CACCTGCCGAACG 11669 |||||||| ||| || ||||| |||||| | || || | | |||| ||| Sbjct 2247804 CTGGTTGAGAGTCGACTCGCGCTCGTCGTTGCCGC-CAAACTGTCCGCCCTTGCC--ACG 2247860 Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 ||| |||| || |||||||| |||| || | ||| || || ||| | || Sbjct 2247861 GGCCTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCC-TGG 2247919 Query 11730 CTGTT-CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 | || |||| || ||||| |||||| | || ||||| || |||||||| || || | Sbjct 2247920 CAGTGGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACT 2247979 Query 11789 TTGCGGCA--GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 ||| | | | ||||| | |||||| || || | |||||| ||| |||| || | Sbjct 2247980 ---CGGAACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAA 2248036 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | ||||||||||| ||||| || | ||||| ||||| ||| || ||||| |||||||||| Sbjct 2248037 GAAGAGTCTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCAC 2248096 Query 11906 C--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTC 11963 | |||| ||| ||||| ||||||||| | |||| |||| || ||||| Sbjct 2248097 CGAGCTTC--TCGTACTTTGTAGGCTCCTTGAGGAATTTTACAAACTCCATAATCTCCTC 2248154 Query 11964 CTTGGCGGAGTCGATACCCTCAACATCGGTGAAACG 11999 |||||| ||| || || | || ||| |||||| Sbjct 2248155 CTTGGCCTCGTCCATGCCGGCGACGTCGCGGAAACG 2248190 >seq4 Length=4180124 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || |||| ||||| Sbjct 54866 GGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCC 54925 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||||| | ||||| ||||| ||||| | || ||| || |||||||| Sbjct 54926 GGGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGAT 54985 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || || || || | || |||||||| ||| | |||| || ||| || Sbjct 54986 ACCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAA-GACGAGCTCTCGTCCGAGA 55044 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| ||||||||||| |||||| || |||||||| | || | ||||| | || Sbjct 55045 TCCAGCGGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTTGA 55104 Query 119731 AAAG 119734 | || Sbjct 55105 AGAG 55108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975874842600