Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 seq4 120 4e-22 seq1 107 2e-18 seq2 89.7 6e-13 >seq5 Length=3690501 Score = 206 bits (228), Expect = 3e-48 Identities = 680/1046 (65%), Gaps = 27/1046 (3%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| || ||||| | ||| | || | ||| ||||| || || || || Sbjct 3209779 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGAGTTCTTGGC- 3209837 Query 106340 GTCTCAA---CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||||| |||| || | || | ||||| | || || || ||||| |||| | Sbjct 3209838 --CTCAATGACGGGGTAGTAGTTGCGCGAGATGACGCAGTCGAGGTTCTTGGTGACAACC 3209895 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 || || || || || || || | | | || | |||| |||| | |||| | Sbjct 3209896 TTGGTAATCTCGTGGAGCTTCTTAAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCA 3209955 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| || || || | ||||| || || ||| || | | |||||| | | Sbjct 3209956 GGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATA 3210015 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| ||| || || || | | || ||||| ||| | Sbjct 3210016 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGG 3210075 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||||||| |||| || ||||| ||||| | || |||||| Sbjct 3210076 TTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATG 3210135 Query 106637 GCCTTCCACA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTAC 106693 || ||| | | || | | || | || | ||| |||| | ||||| ||||||| Sbjct 3210136 GCAAACCAGAGCTTCTGAGCCTTGATAGTCTTGCG---GCCCTTGCCCTCACGCTCGTAC 3210192 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTC 106752 ||| |||||| || |||||||||||| |||||||||| || || || || | | Sbjct 3210193 TTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAGGCC-GGGGCATTCGGC 3210251 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | || | ||| | ||| | |||| || ||| ||||||| ||||| | || Sbjct 3210252 GGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGAT 3210311 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| |||| | ||||| || | ||| |||| || | || ||||| || | Sbjct 3210312 CCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAG 3210371 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 106929 || ||||| || | || ||| |||||||| ||||| || |||| || | | || Sbjct 3210372 GTCGAGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGG 3210431 Query 106930 ---CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 ||| | ||| | || | || || || || || |||| | | || ||||| Sbjct 3210432 GCGCTTGTTA---CCACCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCAT 3210488 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTC 107044 || | ||||| | || | || || || || || |||||| ||||| | Sbjct 3210489 GGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTACGAG--CCCTTGGCACGA 3210546 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | |||||||| | || ||||| || || ||| ||||| || || || | | Sbjct 3210547 ATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 3210606 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 ||||| | ||||| |||| || ||||| ||||| |||||| |||||||| ||| Sbjct 3210607 AGAGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGAC 3210666 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 ||||| || || ||||| || ||||||||||| || | ||||| | || || Sbjct 3210667 ATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGC 3210726 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||||| || ||| ||||| | ||| ||||||| || |||||||| ||||| Sbjct 3210727 TCCGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATC 3210786 Query 107285 GCCACACGCATAAACATGTATTGGGG 107310 | |||||||||| ||||| ||||| Sbjct 3210787 GAGACACGCATAATCATGTGCTGGGG 3210812 >seq4 Length=4180124 Score = 120 bits (132), Expect = 4e-22 Identities = 238/346 (69%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| ||||| || | ||| |||||||||||| | |||| || |||||| || || Sbjct 54689 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAAT 54748 Query 117156 GAGATTACATGGGA-GTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 ||| ||| |||| | || || || |||| | | |||||||| || ||||| || | Sbjct 54749 GAGCG-ACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGA 54807 Query 117215 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCCACG 117273 ||| || || |||| ||| | | || | || | ||||||| | Sbjct 54808 TGATCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAG-GTGTGTGAAGAGGAGACAG 54866 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||||||||| || || || || || || || |||||| || || Sbjct 54867 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCG 54926 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | | ||| || || |||||||||||| Sbjct 54927 GGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATA 54986 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAG 117439 ||||| || ||||| |||| |||||||| ||||| || |||| Sbjct 54987 CCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA-CGAG 55031 >seq1 Length=5948321 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 |||||| | |||||||||||| || | |||| || || || || | | ||| | Sbjct 2247864 CTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGT 2247923 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 | || ||||| || || | || || ||||| ||||||||||||||||| | | Sbjct 2247924 GGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGA 2247983 Query 9482 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 |||| | || ||||||||| || | ||||| || |||| ||| |||||||| Sbjct 2247984 ACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGT 2248043 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||| ||||| || ||| | ||| | |||||| || ||||||||||| || Sbjct 2248044 CTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 >seq2 Length=4873547 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||| || || || || || || ||||| ||| || || Sbjct 436714 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTTGAAAAGGTCAGACCC 436773 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 117392 |||| || || |||||||| | ||| |||| || ||| || || ||||| |||||||| Sbjct 436774 CGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCA-AACGAGCCGGAAAAGAAGAT 436832 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGC 117423 ||||| |||||||||||||||| || ||| Sbjct 436833 GCCCTCGACACACGCAAACGCAATCAGACGC 436863 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||| ||||| |||| |||||| || |||||||| || | || || | ||| | Sbjct 2022747 CCGGTACCAATACCATCGGCTCCATTGACCAGAACCATGGGCACTGTAGGGAGGTAGTAC 2022806 Query 168351 TCTGGTTCAATTGAGC-GCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGG 168409 ||||| || || | || | || || ||| ||| ||||||||| || | || ||| Sbjct 2022807 TCTGGCTCGAT-GCGCTGGCCGTCCTCAACCAGGTAGTTGAGAATGGCATCGTCCGCCTT 2022865 Query 168410 ATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGC 168469 | ||||| |||| | | || || || ||||||||||| | | || || Sbjct 2022866 GTGGAAGATGGTGCGGGTCATGCGGGGAATGTTGGTGAAAATGTAACGAGCGCTAGCCGC 2022925 Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529 ||||| |||||| | || ||||| ||||||||| || || ||||| || ||||| Sbjct 2022926 GTCCTTTCCACCCTGCATGCGAGTACCGAATTGACCATTGGGCTCGAGAAGATTGATGTT 2022985 Query 168530 GTT 168532 ||| Sbjct 2022986 GTT 2022988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980674629080