Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4 114 8e-21 seq1 89.7 3e-13 >seq4 Length=4180124 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || || ||||||||||| ||||| || ||| | || |||| || Sbjct 22738 AACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 22679 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 22678 GAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 22619 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | |||| || | ||| || |||| ||| ||||| || Sbjct 22618 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTT 22559 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || |||||||||||| Sbjct 22558 GCCGGTGAGAGTCTTGACGAAGATCTGCATA 22528 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||| || ||| | || | || || ||||| Sbjct 22960 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTG 22901 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| || || || || || |||||||| | || | ||||||||||| |||||| Sbjct 22900 CTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTT 22841 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | |||||| | || | || | |||||| || | || ||||| || ||||| Sbjct 22840 CGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCCGT 22781 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || |||||||||||| Sbjct 22780 CAAGGTCTTGACGAAGATCTGCATA 22756 >seq1 Length=5948321 Score = 89.7 bits (98), Expect = 3e-13 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 |||||||||||| | || | || || ||||| || ||||| || || || || |||||| Sbjct 4244177 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 4244118 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCAC 34923 || | || | ||||||||||| |||||| ||||| | | ||||| | | Sbjct 4244117 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC----GTTGTCGATGGTGTC 4244062 Query 34924 CG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || |||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 4244061 CGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633532739976