Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 >seq3 Length=4554691 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGC--CCTCATGTCCGTGTACTCTGCTCCGA 30172 ||||| ||||| ||| ||||| || || || | ||| || ||||| |||| |||| Sbjct 2526109 AGCTGGTCCACGCCCTGCCCCGCATAATCCGCGTCGGCAT--CCTTGTACGCTGCCCCGA 2526166 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30232 |||| | ||||||||| |||||||| || |||| || ||||| | |||| | | | Sbjct 2526167 AATGGCGCCACTGGAAGCCGTACACGGGCCCCAAATCGCCCTCGCGGCGGTGCCCCAGCC 2526226 Query 30233 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 | |||||| | | | || | | |||||| || ||||||| || || ||||| ||| Sbjct 2526227 CGACCTTGTCGAGATACTCGCGGCTCCCGTTGCCGGCCCAGATGTTCACGCCCTTGGCGG 2526286 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 ||||| | || ||| | || ||| ||||| ||||||||||| | |||| | Sbjct 2526287 CGAGCTTGGCGCCGTCCGTGCATCCCGAGACAAACCAGAGCAGCTCCTCGATGACGCCGC 2526346 Query 30353 TCCAAAAGACCCTCTTGGT 30371 | || ||||||||||| Sbjct 2526347 GCGTGAACACCCTCTTGGT 2526365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617515339541