Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 329 6e-85 seq4 266 6e-66 seq2 125 1e-23 >seq5 Length=3690501 Score = 329 bits (364), Expect = 6e-85 Identities = 1153/1780 (65%), Gaps = 55/1780 (3%) Strand=Plus/Plus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || ||||| |||||| ||||| | | | ||| ||||| | ||| Sbjct 3209173 AGGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCGGCAAGGTCA 3209232 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | | || || | |||||| || |||||| |||| |||| |||||| ||| Sbjct 3209233 ATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTTGTAGATGGACTTGATGTCCTCGGGG 3209292 Query 212808 AAGCCGGGGATGTTCTGCACAGACCC-CCTGTGT--ATGGTCAGCTGCAGGCGCATGTCC 212864 | ||||| |||| ||| | || || || | | ||| |||||| |||||| Sbjct 3209293 ATTCCGGGAATGTGCTGGATGGAACCACCCGAGGCAATGACGAGCTGCTT---CATGTCA 3209349 Query 212865 TCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTTGACCAGGTGAGGGTTGACTATCTGGAA 212923 |||| |||||| || | | ||| ||| || || ||| ||| | |||||| Sbjct 3209350 TCGTCCCAGAGACCAAGGTTGATGAGGTCACG-GAGGAGCCAGGGGCAGACGACCTGGAA 3209408 Query 212924 GTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTT 212983 |||||| ||||| || | | | ||| | | || ||||||||||| | || |||||| Sbjct 3209409 GTCACCCGAGAGGACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCAAAGCACTCGTT 3209468 Query 212984 GTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCT 213043 || |||||||| | || ||| ||||||||||| || || || || ||| | Sbjct 3209469 CCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACAAGAAGCGAGTTGCG 3209528 Query 213044 CACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 || ||||||| | | || | || ||||| |||||| ||| | | | || | Sbjct 3209529 GACACCGTGCTGGGCAATCTTCTGGCGGAGCTCGTCCCAGTTCCAGAGGTCGGTGGGGAC 3209588 Query 213104 CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCT-GCCCT 213162 || || ||| | ||||||||| | |||| | || | |||| ||||| Sbjct 3209589 G-CGGCC--------CCAGAGGTCAAACTGAAGCTTGCCCT-GCGAAATGGGCGAGCCCT 3209638 Query 213163 GGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGT 213222 ||| |||| ||| |||| | || ||||| |||||| |||| || ||||| |||| Sbjct 3209639 CGTACGAGGGGTACTTGCCAAGTTCGACGGCCATCTCGCACGACGACTCGAGGGCGGCGT 3209698 Query 213223 AGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA 213282 ||||||||| ||||| |||| |||||||| || | || || ||||||| Sbjct 3209699 GGTAGATGGTCTCAAAGATCTTGAGGTTGAGCTCACGAGCAGCGGGCGAGTCAAAGGGCA 3209758 Query 213283 TCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 | | || || || | || || || |||||||| |||| |||| ||| | ||| Sbjct 3209759 TGCGGAGAGCCATG-AAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGG 3209817 Query 213342 CTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 | || ||| || || | ||| | |||||| |||||| ||||| || | Sbjct 3209818 CGCATGTTCGAGTTCTTGGCCTCAATGACGGGGTAGTAGTTGCGCGAGATGACGCAGTCG 3209877 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCC 213461 ||||| |||| | || ||||| | | | || | || | || ||||| Sbjct 3209878 AGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTCT------TAAAGTCGTAGGTG 3209931 Query 213462 CCGTCCTGCA------CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACC 213515 |||| || | |||| |||| ||||| || ||| |||||||| ||||| ||| Sbjct 3209932 CCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACC 3209991 Query 213516 TCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCC 213575 || | | | | | |||||| || ||||| ||||| |||||| | ||||||||| Sbjct 3209992 TCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCG 3210051 Query 213576 AGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCG 213635 |||| ||| ||||| ||||| |||||||| ||||||||||||||| ||||| || Sbjct 3210052 AGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCA 3210111 Query 213636 GTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCC 213693 ||||| ||||| | | || || ||| |||||| | | ||||||| | | Sbjct 3210112 GTCTCAGTCTGGGCCTCGAGAAT--GGCAAACCAGAGCTTCTGAGCCTTGATA----GTC 3210165 Query 213694 TGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG 213752 | | || | | | | | |||||||| ||||||||| | | || || | | Sbjct 3210166 TTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGG 3210225 Query 213753 ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTG 213812 || | || || || || ||||| ||||||||| ||||||| |||||| | | Sbjct 3210226 ACGTCGGAGAGGCCGGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCG 3210285 Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 || | | |||||| ||||||| || ||| || ||| ||| ||||| | || | | Sbjct 3210286 ACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACC 3210345 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| || ||| ||||| || || || ||||| |||| || |||||||| ||| Sbjct 3210346 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCGGCGTGCCAGGGC 3210405 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCC 213989 || | ||||||||||||||| || || | |||| || |||||||| || | || Sbjct 3210406 TCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAACGAGCA 3210465 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 || | || || || | ||| || | ||||| || | |||||||| || || Sbjct 3210466 GTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCA 3210525 Query 214050 ATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTG 214109 || |||||||| ||| | | |||| ||| ||| || || || ||||| |||| Sbjct 3210526 ATGTACGAGCCCTTGGCACGAATGTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTG 3210585 Query 214110 GAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGG 214169 |||||| ||||||| | | | ||| || ||||||| | || ||| || | | | Sbjct 3210586 GAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCATG 3210645 Query 214170 TTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGG 214229 | | |||||| ||| | |||||| || | || | |||||| || || || Sbjct 3210646 GCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGC 3210705 Query 214230 CTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATG 214289 ||| ||| | | | | || | ||| |||||||||| | ||| ||| Sbjct 3210706 GAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATG 3210765 Query 214290 TCGTGCTTGTGGAT--CTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGG 214347 | | |||||| | | ||| || | ||| | |||||||||||| | ||| || Sbjct 3210766 TTCTCGCCGTGGATACCGATCGAG-ACA-CGCATAATCATGTGCTGGGGACGCTC---GG 3210820 Query 214348 GTCCTTTGGGGCCCTT---GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGG 214404 | ||| ||| | ||| ||||| || ||||| || |||||||| ||||||||| Sbjct 3210821 CGACCTTGCCGCCGATGCGGAGGAGGTACGAACGCTCAAGGGTCTTGAAGCCAAAGTAGT 3210880 Query 214405 AGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAG 214444 ||||| | || ||| |||| |||| ||||||| Sbjct 3210881 TGTAGGCAAAGTCACGGTCGTAGATGATGGCACCGTCCAG 3210920 >seq4 Length=4180124 Score = 266 bits (294), Expect = 6e-66 Identities = 380/531 (72%), Gaps = 17/531 (3%) Strand=Plus/Plus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 ||| |||||||| | ||| |||| | |||||| ||||||| ||| ||||||||||| Sbjct 54596 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 54655 Query 47920 TGTGTTATACACC----CGTGTC--AGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTA 47973 | ||| |||| | ||| || ||| | | | ||||| | || ||||| | Sbjct 54656 AGAGTTGTACATCTTCTCGTTTCCGAGGGCGA------CGAGCAGACGGTCGGCGACAAA 54709 Query 47974 CTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTT 48033 ||| ||||| | |||||||||| ||||||||| ||||| |||||||| | ||||| Sbjct 54710 CTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAATGAGCGACACGGGAAGAGCCTC 54769 Query 48034 TGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTC 48093 ||||| ||||||| ||| |||| || || ||| | |||| | || | || | Sbjct 54770 GGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATGATCTTGTCAATGAGGT-CGG 54828 Query 48094 TGAGGGTTTGTTG-CGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | ||| | | || ||||| || |||| | ||||||||||| |||| | | Sbjct 54829 GGTGGGGACGACGGCGGAGGTGTGTGA---AGAGGAGACAGGCAAAGTCGGTGTGGAGAC 54885 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | ||||| || ||||||| ||||||||||| ||| || ||||||| || | || | Sbjct 54886 CCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTTCT 54945 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | ||||| || || ||||||||||| ||||| || || || || | Sbjct 54946 TGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAAGG 55005 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTG 48332 | |||| | ||| ||||||| | | ||| ||| ||||||||| || |||||||| | Sbjct 55006 CAATGAGGCGCTCAGCGAAAGACGAGCTCTCGTCCGAGATCCAGCGGAGAGCCCAGTCGG 55065 Query 48333 CCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 |||||||||||||||| || || ||||| |||||| |||||| | || || Sbjct 55066 CCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTTGAAGAGGTACTGGC 55116 >seq2 Length=4873547 Score = 125 bits (138), Expect = 1e-23 Identities = 194/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 48001 GTTCATGCCTATGAGGGACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 ||| ||||| || || | ||| ||| | || | |||||||||||||| || |||| | Sbjct 436584 GTTGATGCCGATCAGCG-CACAGGGGAGCGCATCCGTGAGAAACTCCTTTTCAATCTCGA 436642 Query 48060 CGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG 48119 | || || | | ||| | | || | ||| ||| | |||||| || | Sbjct 436643 CCGCCTCGCGGATAATGTTGTGCACCTCGTCCTCCGAGCACCGATGGCGCAGATG---GC 436699 Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 |||| |||| ||| |||||||| |||||| ||| ||||| || ||||||| |||| | Sbjct 436700 CATACAGCAAGCACGCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTTG 436759 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 | ||| ||||| |||| | ||| | || |||||||||||||| ||||| || |||| Sbjct 436760 AAAAGGTCAGACCCCGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCAAACGAGC 436819 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 | || |||||||||||||| || ||| ||||| Sbjct 436820 CGGAAAAGAAGATGCCCTCGACACACGCAAACGC 436853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532602049280