Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 345 8e-90 seq4 172 1e-37 seq2 104 4e-17 >seq5 Length=3690501 Score = 345 bits (382), Expect = 8e-90 Identities = 839/1259 (67%), Gaps = 39/1259 (3%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| |||||||||||||||||||||||| | |||||| ||| | || |||| || Sbjct 3209689 AGGGCGGCGTGGTAGATGGTCTCAAAGATCTTGAGGTTGAG-CTCACGAGCAGCGGGCGA 3209747 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||||| || || | ||| ||||||| || ||||| || |||| ||||| Sbjct 3209748 GTCAAAGGGCATGCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGAC 3209807 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||| | ||| | | |||| || || || ||||| || ||||| ||| Sbjct 3209808 GGGGCGGTGGCGCATGTTCGAGTTCTTGGCCTCAATGACGGGGTAGTAGTTGCGCGAGAT 3209867 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | || ||||||| |||| || || | |||| ||||||| | || Sbjct 3209868 GACGCAGTCGAGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTCT------TAAA 3209921 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 | | | ||||| | | | || ||||| || ||||||| ||| || Sbjct 3209922 GTCGTA---GGTGCCGTTCTCAAAG---TCGACAAAGGCAGGGAGGGCAATCGAGGCAAG 3209975 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||| || ||||| |||||||| | | |||| || ||||| || ||||||||| Sbjct 3209976 GTTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGA 3210035 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 |||||||||| || ||||| | || || |||||||| |||||||||||||||||||| Sbjct 3210036 CGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAG 3210095 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| ||||| || |||||||| ||| ||| | ||||| |||||| | |||| | Sbjct 3210096 CATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCT-TCTGAG 3210154 Query 221898 CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | |||| | ||| |||| |||||| ||| ||||| Sbjct 3210155 CCTTGATAGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTC-------GTAGAGAGC- 3210206 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 ||||||| ||| || | ||| ||||| || || |||||| ||||| || Sbjct 3210207 -CTCAAACTCCTCAGAGTGGACGTCGGAGAGGCCGGGGCATTCGGCGGGGCACATGAGGG 3210265 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||||| || | | ||| | | |||||||||||||| |||||| || || | | Sbjct 3210266 TCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGA 3210325 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 |||| || | || || ||||||| ||||| ||| || | || || | || || | Sbjct 3210326 AGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGA 3210385 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || |||||||| ||||| || |||| ||| | || ||||| |||||||| |||| Sbjct 3210386 AGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCAC 3210445 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| || || | | ||||| | || || || | || || | ||||| | Sbjct 3210446 CCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAG 3210505 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATG 222310 | ||||||||||| |||||||| || ||| | | ||| ||| | | Sbjct 3210506 AGTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAATGTT-GTGGATGTGGAGA 3210564 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 |||||||| ||||| || |||||| ||||||| ||||||||||||| |||||| Sbjct 3210565 CCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCG 3210624 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430 || |||||||| ||||| | | | || || || ||||||||||| | | || || | Sbjct 3210625 TCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTA 3210684 Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTAC 222490 | |||||| || || || || |||||| |||||||| | | ||||| || | ||| Sbjct 3210685 CCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAG 3210744 Query 222491 GTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 ||||| | ||| | | ||||| || ||||| || || | | | ||| |||| Sbjct 3210745 GTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATG 3210804 Query 222551 TACTGGGGCCTCTCCACAGGACCCTTGGAGC---TGGAGAGCAGGTACGATTTTTCCAGA 222607 | |||||| | ||| | || ||||| || || ||| |||||||| || || Sbjct 3210805 TGCTGGGGACGCTCGGC--GA-CCTTGCCGCCGATGCGGAGGAGGTACGAACGCTCAAGG 3210861 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAG 222666 |||||||| |||||||||||| | ||||||| | | ||| | | ||| ||||||| Sbjct 3210862 GTCTTGAAGCCAAAGTAGTTGTAGGCAAAGTCACGGTCGTAGATGATGGCACCGTCCAG 3210920 >seq4 Length=4180124 Score = 172 bits (190), Expect = 1e-37 Identities = 345/512 (67%), Gaps = 15/512 (3%) Strand=Plus/Minus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| ||| ||| ||| ||||||||| |||||| ||||| | |||||| Sbjct 55099 GCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCCGCTGGATCTCG 55040 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | ||||| | | || | ||||| || | ||||||||||| || ||||| ||||| Sbjct 55039 GACGAGAGCTCGTCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGGTATCTTC 54980 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCT 25973 ||| || ||||| || | ||||||||||||||| || | |||| ||||||||| || Sbjct 54979 TTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGC-GTGGACTCATGCCCGGACT 54921 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||| ||||||||||||||| | |||||||||||||||| || |||||||| || Sbjct 54920 CACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCT 54861 Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA---AGAGACCGTCTACAGTATCAT 26090 |||| ||| ||| |||| | | | | || || | | ||| ||||| Sbjct 54860 CCTCTTCAC---ACAC---CTCCGCCGTCGTCCCCACCCCGACCTCATTGACAAGATCAT 54807 Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNT 26150 ||| |||||||| |||| ||| ||||||| | | Sbjct 54806 CAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCGTGTCGCTCAT 54747 Query 26151 GGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT 26209 ||||||||| | |||||| |||| |||||||||| ||| ||||||| |||||| || Sbjct 54746 TGGCATGAACGCTACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGT 54687 Query 26210 -GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAAC 26268 ||| || ||| || | | |||| | | ||||| |||||||||||||| | Sbjct 54686 CGCC--CTCGGAAACGAGAAGATGTACAACTCTACCAACCCCTTCGACTTTATGGAGATG 54629 Query 26269 ATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 || ||| | | || ||| |||||||||| || Sbjct 54628 ATCTCGCTCCAGGGCAAGGCCAACTTCTTCGA 54597 >seq2 Length=4873547 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 25878 GCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937 ||| ||| | || ||||| ||| ||||||||||| || ||| ||||||||||| || Sbjct 436863 GCGTCTGATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGAT 436804 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||||||||| || ||| |||| || ||| |||||| |||||||||||| Sbjct 436803 TTTCTGGCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTC 436744 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 | |||||||| | |||| || ||||| ||| |||| || Sbjct 436743 GCGCGACGAGGGCATGCACACCGACTTTGCGTGCTTGCTGTA 436702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844602620480