Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 188 9e-43 seq4 120 4e-22 seq1 96.9 4e-15 seq2 89.7 6e-13 >seq5 Length=3690501 Score = 188 bits (208), Expect = 9e-43 Identities = 677/1047 (65%), Gaps = 29/1047 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||| | ||||| |||||||| || ||||||| ||| Sbjct 3210812 CCCCAGCACATGATTATGCGTGTCTCGATCGGTATCCACGGCGAGAACATTGAAAAGGTC 3210753 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || ||||| | || || | ||||| | || ||||||||| Sbjct 3210752 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTTACCCACGCCTCGCCTACCCTCTTC 3210693 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || || |||||||| |||||||| |||||| ||||| ||| Sbjct 3210692 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAAGGACGAC 3210633 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || |||| ||||| | ||||| | | || || || ||||| ||| || || Sbjct 3210632 TCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 3210573 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 75509 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 3210572 GGTATCGGTCTCCACATCCACAACATTCGTGCCA--AGGGCTCGTACATTGCCGGCACCA 3210515 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || | || | ||||| | || ||||| || | | |||| || || || || | Sbjct 3210514 ACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCTACTGCTCGTTACG 3210455 Query 75570 TAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | | || ||| || |||| || || | || ||||| | || || |||| Sbjct 3210454 TCGACCA---GGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3210398 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | |||||| || | || ||||| || | || ||||| || | || |||| ||| Sbjct 3210397 ACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 3210338 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | || ||||| | |||| ||||| | ||||| ||||||| ||| || |||| | Sbjct 3210337 CCCGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTG 3210278 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||| | ||| | || | || || | | || || || || |||||||||| | Sbjct 3210277 ACGGTGACTGGACCCTCATGTGCCCCGCCGAATGC-CCCGGCCTCTCCGACGTCCACTCT 3210219 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG-TAGAGC--CAATGCGACT 75859 ||||||||||| || |||||| |||||| || ||||| || || ||| |||| Sbjct 3210218 GAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAA---GACT 3210162 Query 75860 GTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | || | | || | | ||| || |||||| | | ||||| |||||||| || Sbjct 3210161 AT-CAAGGCTCAGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGCCC 3210103 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 | ||||| |||||||| ||| ||| ||| ||||| || | | || || || Sbjct 3210102 CTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCAT 3210043 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 |||| || || || ||||| || ||| | |||||| | | || ||| || || Sbjct 3210042 CAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCCGT 3209983 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||||| | || || || ||||| || | |||| | |||| |||| | || Sbjct 3209982 CTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTACGA 3209923 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | | | || || || || || || ||| |||| ||||| || || || | ||||| Sbjct 3209922 CTTTAAGAAGCTCCACGAGATTACCAAGGTTGTCACCAAGAACCTCGACTGCGTCATCTC 3209863 Query 76159 CAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 | || | || |||| ||||| || || || || ||||| ||| | || | Sbjct 3209862 GCGCAACTACTACCCCGTCATTGAG---GCCAAGAACTCGAACATGCGCCACCGCCCCGT 3209806 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 ||| | ||||| || ||||| || || Sbjct 3209805 CGGTCTCGGTGTCCAGGGTCTTGCCGA 3209779 >seq4 Length=4180124 Score = 120 bits (132), Expect = 4e-22 Identities = 238/346 (69%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122 |||| || ||||| |||||||| |||| ||||| || ||||||||||||||||| | Sbjct 55031 CTCG-TCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGG 54973 Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182 | || ||| | | || | ||| | |||||||| || |||||||| || || ||||| Sbjct 54972 GATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCT 54913 Query 65183 CAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCA 65242 | || || || || || || || |||||||||||| || |||||| ||||||| Sbjct 54912 CCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCA 54853 Query 65243 -AGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTT 65301 | || | || | | ||| |||| || || ||| | || ||||| || Sbjct 54852 CACAC-CTCCGCCGTCGTCCCCACCCCGACCTCATTGACAAGATCATCAAGGAGGCTGTC 54794 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCAC-TCCCATGTAATCTCATCGGTATGAACTC 65360 |||||||| | | |||| || || || | |||| ||| ||||| || |||||| | Sbjct 54793 AAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCGTGT-CGCTCATTGGCATGAACGC 54735 Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 | |||| | |||||||||||| ||| | || ||||| ||| Sbjct 54734 TACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTC 54689 >seq1 Length=5948321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| ||||| || ||| ||||| | ||| || ||||| || ||||| || Sbjct 2248097 GGTGCCAAGATTCCCCGCGGTGCCATTCTCTCTGGTCCCCCCGGTACCGGTAAGACTCTT 2248038 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 || ||| |||| ||| ||||| | || ||||| ||| || |||| ||| | | | Sbjct 2248037 CTTGCCAAGGCCACCGCCGGTGAGGCCAAGGTCCCCTTCCTCTCAGT-CTCCGGTTCCGA 2247979 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||||||||||||||| ||||| ||| || | || || ||||| || | | || Sbjct 2247978 GTTTGTGGAGATGTTTGTCGGTGTCGGTCCCTCGCGTGTCCGTGATCTGTTCGCCACTGC 2247919 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | | | || || || || |||| | || ||||||||||| Sbjct 2247918 CAGGAAGAACGCTCCCTGCATCATCTTTGTCGACGAGATTGATGC 2247874 >seq2 Length=4873547 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTA 65137 ||| || |||||||||||||||| ||||| |||||||| ||||| || || ||| || | Sbjct 436863 GCGTCTGATTGCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTT-TGCGGCGA 436805 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 ||| ||| | |||||||| || || |||| || || ||| ||||| || || || | Sbjct 436804 TTTTCTGGCTCAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCT 436745 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | || || ||||| | ||| || ||||| Sbjct 436744 CGCGCGACGAGGGCATGCACACCGACTTTGC 436714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 14540 AACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||||| || ||||| || || ||||||||| ||||| || | |||||| ||| Sbjct 2022988 AACAACATCAATCTTCTCGAGCCCAATGGTCAATTCGGTACTCGCATGCAGGGTGGAAAG 2022929 Query 14600 GATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTT 14659 || || || | | ||||||||||| || || || | | |||| ||||| Sbjct 2022928 GACGCGGCTAGCGCTCGTTACATTTTCACCAACATTCCCCGCATGACCCGCACCATCTTC 2022869 Query 14660 GATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCA 14719 | ||| || | || ||||||||| ||| || || || | ||| || ||| Sbjct 2022868 CACAAGGCGGACGATGCCATTCTCAACTACCTGGTTGAGGACGGCCAGCGCATCGAGCCA 2022809 Query 14720 GACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACG 14779 || | ||| | || || | || |||||||| || |||||| |||| ||||| ||||| Sbjct 2022808 GAGTACTACCTCCCTACAGTGCCCATGGTTCTGGTCAATGGAGCCGATGGTATTGGTACC 2022749 Query 14780 GGTT 14783 |||| Sbjct 2022748 GGTT 2022745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569473228960