Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 104 7e-17 >seq1 Length=5948321 Score = 104 bits (114), Expect = 7e-17 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||| || || | | | | ||| ||||| ||||| | || ||||| || || ||||| Sbjct 1155717 ATCGTAGCCGACCTTGAGGTCCTCCATGGCCTTGACGAGTCGGCGCTGGATGTATCCAGT 1155658 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || || || ||||| || ||||| ||||||||||||| || |||||||| Sbjct 1155657 CTCGGCCGTCTTGACGGCGGTATCGATAAGACCCTCACGACCACCCATGGCGTGGAAGAA 1155598 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||||| |||| || || | | | ||| | || ||||| ||||||| |||||| Sbjct 1155597 GAACTCTTGCGGTGTAAGGCCACGCAGGTACGAGTTTTCGACGAATCCACGCGACTCGGG 1155538 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || |||| ||| | || || ||||| || | || | ||| | || ||||| Sbjct 1155537 TCCATAGTCGTCCTTTGAGAAATGCGGCAGTGTTCGGTGGCGGAATCCGAACGGAATACG 1155478 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCA---CGAAATCATCTGCGAAATATT 302843 |||||| || || ||||||| || | || ||| ||| |||||||| || Sbjct 1155477 CTTTCCTTCGACAATCTGCTGGCCGACACAACCCGA---CATTTGCGAAATGTT 1155427 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 251487 ACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGC 251546 |||||| || ||||| || |||||||||||||| |||||||| |||||||| || || | Sbjct 3204080 ACCGTGCGAGATCATGCAGTCACGCTCCATTTCTCCGAAACGCAGACCACCGTCACGCGA 3204139 Query 251547 CCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTG 251606 | ||||||| | |||||||| || || | || ||||| || || || Sbjct 3204140 ACGACCCTCGACGGGCTGACGCGTAAGGATCTGCAAGGGACCACGGGCACGCGCGTGGAT 3204199 Query 251607 CTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 ||| || | ||||| ||||| || ||||||||| | | ||| || Sbjct 3204200 CTTGTCGTCGACCATGTGCTTCAGTCGCTGGTAGTAGGTGGGGCC 3204244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729