Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 192 9e-43 seq5 176 7e-38 seq2 122 1e-21 seq1 100 5e-15 >seq4 Length=4180124 Score = 192 bits (212), Expect = 9e-43 Identities = 196/254 (77%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||| |||||| || | || ||| |||||| ||||||| |||||||| || Sbjct 54562 TGACACCCGACTTGGCGTAGGCCGAGACTCGCGACTCGAAGAAGTTGGCCTTGCCCTGGA 54621 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||||| |||||| | ||| ||||||| | ||| ||||||| |||| Sbjct 54622 GCGAGATCATCTCCATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTTTCCGA 54681 Query 794011 --GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||| ||||| ||||||||||| || |||||||||||||||||||||| ||||| Sbjct 54682 GGGCGACG--AGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTT 54739 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| ||||||| |||||| || | |||| ||| ||||| | ||| |||| ||| || Sbjct 54740 CATGCCAATGAGCGACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGC 54799 Query 794129 CTCGATGATGATCT 794142 ||| ||||||||| Sbjct 54800 CTCCTTGATGATCT 54813 Score = 120 bits (132), Expect = 5e-21 Identities = 209/301 (69%), Gaps = 5/301 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| ||| ||||||||||| || ||||| Sbjct 54884 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTT 54943 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| |||||||| ||||| ||||| ||||| ||||| Sbjct 54944 CTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAA 55003 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | ||| ||||| || |||| | || ||| | |||||| | ||||| Sbjct 55004 GGCAATGAGGCGCTCAGCGAAAGA---CGAGCTCTCGTCCGAGATCCAGCGGAGAGCCCA 55060 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| | | |||| | || || ||||| ||||||| | | Sbjct 55061 GTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCCTTGAAGAGGTACTGGCGA-C 55119 Query 794580 GACCGG-GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || || ||| || ||| ||||||| ||||||||||| ||||| ||||||||||| | Sbjct 55120 GAGCGTTGTCACGGATGTAAGTGTCGACAAGGAGCGAGTATGTCTCAGAGTGGATGTTCT 55179 Query 794639 C 794639 | Sbjct 55180 C 55180 Score = 111 bits (122), Expect = 2e-18 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| ||||| |||| ||||||| | | || || ||| | | || Sbjct 3949924 ACTTGGTGACGGCCTTGGTGCCCTCCGAGATGGCGTGCTTCGAGAGCTCTCCGGGGAGGA 3949983 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-C 1485591 | || || |||||||||||||||||||| | ||| || ||| | ||| || || | Sbjct 3949984 TGAGACGGACGGCGGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACGAC 3950042 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || |||||||||| |||| || |||| ||||| ||| || ||||| | | Sbjct 3950043 GCGAGCTTCGAGGCCTCGGTGGCGATACGCTCGAAGATGTCCGAGACGAAAGAGTTGAGG 3950102 Query 1485652 ATCGACATCGATTTGTTG 1485669 || | ||| | |||||| Sbjct 3950103 ATGGCCATGGCCTTGTTG 3950120 >seq5 Length=3690501 Score = 176 bits (194), Expect = 7e-38 Identities = 194/256 (76%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||| ||||||| | | || || ||| | | Sbjct 2871143 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGATGGCGTGCTTCGAGAGCTCTCCGGGGAG 2871202 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| ||||| |||||||||||||| | ||| || ||| | ||| || || Sbjct 2871203 GATGAGGCGGACGGCAGTCTGGATCTCGCGCGACGAGATGGTCGAGCGGTGGTT-GTACG 2871261 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | |||||||||| |||| || |||| ||||| ||| |||||||| | Sbjct 2871262 ACGCGAGCTTGGAGGCCTCGGTGGCGATACGCTCGAAAATGTCCGAGACGAACGAGTTGA 2871321 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||| | ||| | ||||||||||| || ||||||||| ||||||||||| ||||||| Sbjct 2871322 GGATGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGT 2871381 Query 1485710 AAACAAAGGACGAGTA 1485725 | | | |||||||| Sbjct 2871382 AGATGTACGACGAGTA 2871397 Score = 154 bits (170), Expect = 2e-31 Identities = 286/425 (67%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||| ||||| ||||||| |||| | ||||||| |||| |||||||||| | |||| Sbjct 3210018 CTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTT 3210077 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | | |||||||||| |||||| |||| |||| ||||| |||| ||| || ||||| Sbjct 3210078 GGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGC 3210137 Query 2071704 CGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG----GCCCTNNNNNNNNNNNN 2071759 |||| | || | || || || ||| ||||| Sbjct 3210138 AAACCAGA----GCTTCTGAGCCTTGATAGTCTTGCGGCCCTTGCCCTCACGCTCGTACT 3210193 Query 2071760 NNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACG 2071819 |||| || ||||| | | |||| ||| |||||||| |||| | Sbjct 3210194 TTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAGGCCGGGGCATTCGGCGG 3210253 Query 2071820 GGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCC 2071879 |||| | ||| | |||||| ||| ||| | | || || | ||| || ||||| | ||| Sbjct 3210254 GGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCC 3210313 Query 2071880 ACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGT 2071939 | ||| |||| ||||| || || || || ||||||||||||||||||||| |||| Sbjct 3210314 AGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 3210373 Query 2071940 CGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 2071999 |||| |||||| || ||||||||||| ||||| |||||| ||||||||| || || Sbjct 3210374 CGAGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGC 3210433 Query 2072000 GCTTG 2072004 ||||| Sbjct 3210434 GCTTG 3210438 Score = 154 bits (170), Expect = 2e-31 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || || ||| || | ||||||||||| || | ||||| || Sbjct 3210447 CTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGA 3210506 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||||||| || | ||| | |||| ||| || | ||||| | | || Sbjct 3210507 GTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAATGTTGTGGATGTGGAGACC 3210566 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| |||||||| | ||||||||| | ||||| | || || || ||||||||||| || Sbjct 3210567 GATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTC 3210626 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||||| |||||||| | | || ||||||||||| | || ||| | | || || Sbjct 3210627 AATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACC 3210686 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 ||| |||||||| || |||| Sbjct 3210687 GGCGTTGAAGAGGGTAGGCG 3210706 Score = 116 bits (128), Expect = 6e-20 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||||||||| ||||||||||||||||| | ||| |||||||| || ||||| || || || Sbjct 3209049 GTCGACGGTGAACTGGATGGCGTTGGCCGAAGGGCGGGTGCGGAGGTAGTAGATACCAGT 3209108 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGAC 2069372 |||||| ||||| ||| |||| ||||||||| |||| | | |||| Sbjct 3209109 CTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTGAGCTGCGAGAACGACGGGTT 3209168 Query 2069373 GGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432 |||| || | |||||||||||| |||||||| ||| | |||||||| || | Sbjct 3209169 GGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCTCCACGGTCGGCGGCAAG 3209228 Query 2069433 GTCGATGGTCACG--CGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGA 2069485 ||| ||| ||| | ||| || | |||||| || |||||| | | || ||||| Sbjct 3209229 GTCAATG---ACGGCCTTTTGCGAAATCTCCCAGACAGTCTTGTAGATGGACTTGA 3209281 >seq2 Length=4873547 Score = 122 bits (134), Expect = 1e-21 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||| ||| |||||| |||||||||||||| |||||||| |||||||| | ||||||| Sbjct 436392 TACGCGCTGACGCGCGACTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTCCATC 436451 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||| |||||||||| ||||| || | | ||||||| | | |||||| Sbjct 436452 CAGTCGAAGGGGTTGGCCGCGTGGTAGATTTTGCTGTAGCCGAGCGCGACGACGAGGCGG 436511 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATG 794057 || ||||||||||| ||||||||||||||| Sbjct 436512 TCCGCGACGAATTCCATGTACTGGCACATG 436541 >seq1 Length=5948321 Score = 100 bits (110), Expect = 5e-15 Identities = 139/192 (72%), Gaps = 12/192 (6%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| ||||||||| | || || | ||||| ||||| || ||||| ||||| Sbjct 1154554 ACCTTCCGTCTCAACCTGTCGGTCACCTCGCCGTACAATGCCGATTTCGACGGAGACGAA 1154613 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAA--GTCGCCCACACCATGG 429750 |||||| ||||||| || || |||||| | | |||||||| ||||| | ||||| Sbjct 1154614 ATGAACTTGCACGTCCCGCAATCGGAGGAGACCCGCGCCGAGCTGTCGCAGATCGCATGG 1154673 Query 429751 GCGTGGCCCTCAAGGCCG----TGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806 | | ||| |||| | | ||||| ||||||||||||||| |||| || ||||| Sbjct 1154674 GTG----CCT--AGGCAGATTATCTCGCCCCAGGCCAACAAGCCCGTCATGGGTATCGTG 1154727 Query 429807 ATGGACGCCCTC 429818 |||| | ||| Sbjct 1154728 CAGGACACGCTC 1154739 Score = 95.1 bits (104), Expect = 2e-13 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 429067 TCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGG 429126 ||||||||||||||||||| |||| || || |||||||||||| ||| ||||| ||| Sbjct 1154107 TCAAGGGCAAGGAGGGCCGTCTCCGTGGTAACCTCATGGGCAAGCGTGTCGACTTTTCGG 1154166 Query 429127 CGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCCTATG 429186 | || ||||||| | | |||||| | || | | ||| |||| || ||||| Sbjct 1154167 CCCGTACCGTCATTACTGGTGACCCCAACATTCAGCTCGACCAGGTCGGTGTGCCGCGCA 1154226 Query 429187 AGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 429226 |||| || || ||||| | ||||||||||| ||||| Sbjct 1154227 GTATCGCCATGATCCTCACGTACCCCGAGCGCGTCACGCC 1154266 Score = 93.3 bits (102), Expect = 7e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 431046 AACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATGTTTCTGCACATGATCGGCGGGCGC 431105 ||||||||| ||| ||||| | ||| ||| | || | ||| || || || || Sbjct 1155562 AACTCGTACCTGCGTGGCCTTACACCGCAAGAGTTCTTCTTCCACGCCATGGGTGGTCGT 1155621 Query 431106 GAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCGTCGGTGC 431165 |||||||| |||| || |||||||||||||||||||| || ||||||||||| || | Sbjct 1155622 GAGGGTCTTATCGATACCGCCGTCAAGACGGCCGAGACTGGATACATCCAGCGCCGACTC 1155681 Query 431166 ATCAAATCGATGGAGAGCCTGCAGATCAAGCGCGGCGGCCTCGTGCGCAACGCCAACGGC 431225 |||| | |||||| ||| || || || ||| || |||||| | ||||| Sbjct 1155682 GTCAAGGCCATGGAGGACCTCAAGGTCGGCTACGATGGCACTGTTCGCAACTCGAACGGT 1155741 Query 431226 GACATTGTCCAGTT 431239 || || ||||||| Sbjct 1155742 GATATCATCCAGTT 1155755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244591632463