Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 seq1 98.7 6e-16 >seq4 Length=4180124 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| ||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 22740 AGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 22681 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 22680 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 22621 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| || | ||| |||||| Sbjct 22620 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTC 22561 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 22560 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 22968 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 22909 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 22908 TCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 22849 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| || |||||| Sbjct 22848 TGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTC 22789 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 22788 TTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||| ||||| ||||| || | | | || |||| Sbjct 23242 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCC 23183 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 23182 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 23123 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | |||||| || | || |||||| Sbjct 23122 TGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTC 23063 Query 34946 TTTCCCGTGAGG 34957 ||||| |||||| Sbjct 23062 TTTCCAGTGAGG 23051 >seq1 Length=5948321 Score = 98.7 bits (108), Expect = 6e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 |||||||| ||| |||| | || || || ||||| ||||||||||| || || |||||| Sbjct 4244177 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 4244118 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | || | || Sbjct 4244117 TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAA 4244058 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | ||| || || | ||| |||||||| || ||||||||||| || || ||||||||| Sbjct 4244057 GACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 4244001 Score = 89.7 bits (98), Expect = 3e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 |||||||| ||| |||| | || || || ||||| ||||||||||| || || |||||| Sbjct 3541728 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 3541669 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || | || | ||||||||||| | || || |||||| | || | || Sbjct 3541668 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 3541609 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||| || || | ||| |||||||| |||||||||||||| || Sbjct 3541608 GACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTAAC 3541565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692732520523