Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq4 140 3e-28 seq2 114 1e-20 seq5 96.9 3e-15 >seq1 Length=5948321 Score = 143 bits (158), Expect = 3e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 4244157 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTT 4244098 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | |||||| |||| ||||| Sbjct 4244097 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 4244038 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 ||| |||||||| || || || ||||||||||||||||| Sbjct 4244037 GGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGGC 4243999 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 3541708 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 3541649 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | |||||| |||| ||||| Sbjct 3541648 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 3541589 Query 133625 GGTTTTGCCGGTCAGAGTTTTTAC 133648 ||| ||||| || || || || || Sbjct 3541588 GGTCTTGCCCGTGAGGGTCTTAAC 3541565 >seq4 Length=4180124 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | ||| | | | |||||||||||||||| Sbjct 22726 GGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 22668 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||||||||| ||||| |||||||| |||||| || Sbjct 22667 CGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 22608 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | ||| || |||| ||| | ||| |||||||| |||| Sbjct 22607 TGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGAG 22548 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 22547 TCTTGACGAAGATCTGCAT 22529 Score = 136 bits (150), Expect = 4e-27 Identities = 327/487 (67%), Gaps = 17/487 (3%) Strand=Plus/Plus Query 120372 CTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCT 120431 ||| || ||||| | ||||||| | ||| || | | |||||| ||||| |||||| | Sbjct 54596 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGT 54655 Query 120432 CGCGTTAAAGTATTTCGGCTGGC--CCAACTGT-ACGAGCAGTCGGTCCGCTACAAACTC 120488 | ||| ||| || || | || | | |||||||| ||||| || |||||||| Sbjct 54656 AGAGTT---GTACATCTTCTCGTTTCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTC 54712 Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548 |||||||| ||||||| ||||||||||| | | || ||| || | ||| || Sbjct 54713 AATGTACTGGCACATGAGGGTAGCGTTCATGCCAATGAGCGACACGGGAAGAGCCTCGGT 54772 Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGG 120608 || ||||||| |||||| | || |||||||||| || | | || || |||| Sbjct 54773 GAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATGATCTTG---TCAATGAGGTCGGG 54829 Query 120609 CATCTTGTGTTCGA-TGCG--CGT-TCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGC 120664 || | ||| ||| || | | || || || |||||||| ||||| || | Sbjct 54830 ----GTGGGGACGACGGCGGAGGTGTGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGAC 54885 Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| ||||| || ||||||||| || || || |||||||||| || | ||| Sbjct 54886 CCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATGAGTCCACGCTTCT 54945 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 ||| |||| || | ||| || ||||| ||||| | ||||| ||| ||||||| Sbjct 54946 TGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACCCTCAACGGCAGCAAAGG 55005 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 | | | |||||| || || | || ||| | |||||| | ||||| |||| Sbjct 55006 CAATGAGGCGCTCAGCGAAAGACGAGCTCTCGTCCGAGATCCAGCGGAGAGCCCAGTCGG 55065 Query 120845 CCTTTTT 120851 |||| || Sbjct 55066 CCTTCTT 55072 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || | ||| |||||| |||||||| || Sbjct 22953 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 22894 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| ||||||||||| || |||||||| |||||||| ||||| |||| Sbjct 22893 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 22834 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||||| | ||| || || | |||| ||| ||||| |||| || Sbjct 22833 ACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCCGTCAAGGTC 22774 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 22773 TTGACGAAGATCTGCAT 22757 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||| Sbjct 22385 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTT 22326 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | |||| ||||| | || ||| || |||| |||| Sbjct 22325 GTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGAGTGAT 22266 Query 133625 GGTTTTGCCGGTCAG 133639 ||| ||||| || || Sbjct 22265 GGTCTTGCCAGTAAG 22251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || || | | | ||||||||||||||||| Sbjct 23227 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCA-TCCTCGAGCTGCTTGCC 23169 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 23168 AGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 23109 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | | || | ||||||| | ||| || || | |||| ||| || || || || Sbjct 23108 AACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAG 23052 >seq2 Length=4873547 Score = 114 bits (126), Expect = 1e-20 Identities = 355/554 (64%), Gaps = 54/554 (10%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||| ||| |||||| ||| |||||||| | ||||||| || ||| ||| | Sbjct 436388 CTGGTACGCGCTGACGCGCGACTCGAAAAAGTTGGCCTTGCCCTGCAGCGAGATGAGCTC 436447 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTG--GCCCAACTGTACGAGC 120468 ||| | ||||| |||||| ||||| || ||| |||| ||| | | |||| Sbjct 436448 CATCCAGTCGAAGGGGTTGGCCGCGTGGTAGATTTT--GCTGTAGCCGAGCGCGACGACG 436505 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG----------------- 120511 || |||||||| || || || ||||||| |||||||||||| | Sbjct 436506 AGGCGGTCCGCGACGAATTCCATGTACTGGCACATGGACTGGGGTGAGTAGGGGTCTATG 436565 Query 120512 -----------------CGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAA 120554 |||| ||||| | || ||| || | ||| ||||| ||| Sbjct 436566 AGGTTGACTTACGTCTGCGTTGATGCCGATCAGCGCACAGGGGAGCGCATCCGTGAGAAA 436625 Query 120555 CTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGTGG-CCGGGCATCT 120613 |||||| ||||| || |||||||| || ||| | ||| || ||| ||| | Sbjct 436626 CTCCTTTTCAATCTCGACCGCCTCGCGGATAATGTTGTGCACCTCGTCCTCCGAGCACC- 436684 Query 120614 TGTGTTCGATG-CGCGTTCGGTAGTACAG---GCACGCAAAGTCCGTGTGCAGGCCCTCG 120669 |||| ||| || ||||| |||||||||||| ||||||| ||||||| Sbjct 436685 -------GATGGCGCAGATGGCCATACAGCAAGCACGCAAAGTCGGTGTGCATGCCCTCG 436737 Query 120670 TCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATG 120729 |||||||| || |||||||| ||| ||||| || |||| | || | |||||| Sbjct 436738 TCGCGCGAGATGAGCTCGTTTGAAAAGGTCAGACCCCGCATAAGCCCGCGCTTCTTGAGC 436797 Query 120730 TAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACC 120789 |||| || || ||||| ||| |||||||| | |||||| || ||||| || | | Sbjct 436798 CAGAAAATCGCCGCAAACGAGCCGGAAAAGAAGATGCCCTCGACACACGCAAACGCAATC 436857 Query 120790 ATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTT 120849 | ||| | || || | ||| | | || | |||| ||||| ||||||||| Sbjct 436858 AGACGCGTGCGGAA---CGGCATCTCGTCGGTAATGTATTTCAGCGCCCAGTCGGCCTTT 436914 Query 120850 TTGCGCACGCACGG 120863 || || | ||||| Sbjct 436915 TTCCGGATACACGG 436928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 224/337 (66%), Gaps = 17/337 (5%) Strand=Plus/Plus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACA------CCAGCAACGGCTGCACCTCCGC 116525 ||||||||||||| | |||||||||||||||| | || ||| |||| ||| | Sbjct 4511950 GCACGGCTTCCACATCCACGAGTTTGGCGACATTTCGTCGGGCCACGACTGCCTCTCGAC 4512009 Query 116526 CGGCGAACACTTCAACCC---CACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCG 116582 ||||| ||||||||||| || | ||| ||||||||||| || | | || Sbjct 4512010 CGGCGGCCACTTCAACCCGTACAAGCGTCAG---CACGGCGCGCCGGGCGACCGCAACCG 4512066 Query 116583 TCACGTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCCGTGGA 116642 |||||||| ||||| |||||||||||| | | | |||||| || | | || Sbjct 4512067 CCACGTCGGCGACCTCGGCAACATTGAGACGGACG---CCAACGGCGTCGCCAAGATCGA 4512123 Query 116643 CAAGATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGT 116702 | | |||||| || | || |||| || |||| | |||| || | |||| Sbjct 4512124 CTTTACCGACAAGGTCCTCCGTCTCCACGGCAAGCGCAGCATTATCGGACGGGGGATCGT 4512183 Query 116703 CGTGCACACCAACGCCGACGACCTGGGACTGGGCCA-GCACCCGCTTAGCAAAACCACCG 116761 ||||||| || | | |||||||| || | ||| | | ||| | ||| ||||||| Sbjct 4512184 CGTGCACGCCGGCACTGACGACCTCGGCCGCGGCAACGAGACCGACT-CCAAGACCACCG 4512242 Query 116762 GCAACTCGGGCGGCCGCCTCGGCTGCGGCATTATCGG 116798 || || | || | || |||||||||| | || || Sbjct 4512243 GCCACGCCGGTGCGCGTGCCGGCTGCGGCGTCATTGG 4512279 >seq5 Length=3690501 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 116509 AACGGCTGCACCTCCGCCGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCC 116568 |||||||||||||||||||||| |||||||||||| |||| || ||||||| || ||| Sbjct 2538893 AACGGCTGCACCTCCGCCGGCGGCCACTTCAACCCCCACGGCAAGAACCACGGTGCCCCC 2538834 Query 116569 AACGCCGCCGTTCGTCACGTCGGTGACCTGGGCAAC 116604 | ||| | | || |||| ||||||||| |||||| Sbjct 2538833 ACCGCTACTGAGCGCCACGCCGGTGACCTCGGCAAC 2538798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420697273080