Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 100 7e-16 >seq4 Length=4180124 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||| ||||| || |||||| |||| || || || ||||| |||| || ||| Sbjct 23052 CTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGTCCGACACTATCGACAACGTTAAG 23111 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || || || || ||| || ||| || | || ||||| || || Sbjct 23112 GCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGC 23171 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 |||||| | || |||||| | || ||| |||| |||||| ||||||| ||||| || ||| Sbjct 23172 AAGCAGCTCGAGGATGGACGTACCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCTT 23231 Query 206371 CACCTTGT 206378 |||||||| Sbjct 23232 CACCTTGT 23239 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || || | || || || ||| ||| Sbjct 22532 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCGGAC 22591 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || ||| || Sbjct 22592 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 22651 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || ||||| | || | |||| |||||| | Sbjct 22652 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATT 22711 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || |||||||| ||| Sbjct 22712 CAGAAGGAGTCGACCCTTCACCTGGTT 22738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820542584657