Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 176 6e-38 seq5 174 2e-37 seq2 116 5e-20 seq6 93.3 6e-13 seq1 89.7 7e-12 >seq4 Length=4180124 Score = 176 bits (194), Expect = 6e-38 Identities = 195/255 (76%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||||| ||| |||| ||| | ||||| ||| |||| | || || ||| Sbjct 54813 AGATCATCAAGGAGGCTGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCGTGT 54754 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||||||| ||||||||||| ||| ||||||||||||||||||| | |||||||||||||| Sbjct 54753 CGCTCATTGGCATGAACGCTACC-CTCATGTGCCAGTACATTG-AGTTTGTCGCCGACCG 54696 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||||| || ||||| | |||||| ||| | ||||||| ||| | | Sbjct 54695 TCTGCTCGTCGCCCTCGGAAAC-GAGAAGATGTACAACTCTACCAACCCCTTCGACTTTA 54637 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACG 1456759 ||||| ||||||||||| |||||||| ||||||| |||||| || || | | |||| Sbjct 54636 TGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGCGAGTCTCGGCCTACG 54577 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| | || |||| Sbjct 54576 CCAAGTCGGGTGTCA 54562 Score = 114 bits (126), Expect = 2e-19 Identities = 187/263 (71%), Gaps = 5/263 (2%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC-CGGT 1456073 || |||||||||||||| || ||||||||||| ||||||| ||| || ||| || | Sbjct 55180 GAGAACATCCACTCTGAGACATACTCGCTCCTTGTCGACACTTACATCCGTGACAACGCT 55121 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 || | ||||||| ||||| || || | || | | | ||| |||||||| Sbjct 55120 CGTCGCC-AGTACCTCTTCAAGGCCATTGAGACCATTCCCTGCATCAAGAAGAAGGCCGA 55062 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||| | |||||| | ||| || ||| | || || ||||| ||| | | | Sbjct 55061 CTGGGCTCTCCGCTGGATCTCGGACGAGAGC-TCGTCT-TTCGCTGAGCGCCTCATTGCC 55004 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| || || ||||| ||||| |||||||| ||| | | ||||| ||||||||| Sbjct 55003 TTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCGTTCGCCTCGATCTTCTGGCTCAAG 54944 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| || ||||||||||| || Sbjct 54943 AAGCGTGGACTCATGCCCGGACT 54921 Score = 105 bits (116), Expect = 1e-16 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 724961 CAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC 725020 ||||||| ||||| | ||| | ||||| || ||| ||||| |||| || |||| ||| Sbjct 3950120 CAACAAGGCCATGGCCATCCTCAACTCTTTCGTCTCGGACATCTTCGAGCGTATCGCCAC 3950061 Query 725021 CGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| ||| || ||| | |||| | ||| || ||| ||||||||||| Sbjct 3950060 CGAGGCC--TCGAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCGCGAGATC 3950003 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || || ||| | | ||| || || | | ||||||| |||| |||||| Sbjct 3950002 CAGACCGCCGTCCGTCTCATCCTCCCCGGAGAGCTCTCGAAGCACGCCATCTCGGAGGGC 3949943 Query 725139 ACCA 725142 |||| Sbjct 3949942 ACCA 3949939 >seq5 Length=3690501 Score = 174 bits (192), Expect = 2e-37 Identities = 343/503 (68%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 259683 ACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTTG 259742 ||||||| || |||| ||||||| | ||| ||| ||||||| |||| ||||||| Sbjct 3210931 ACAAGGACCGTCTGGACGGTGCCATCATCTACGACCGTGACTTTGCCTACAACTACTTTG 3210872 Query 259743 GTCTGGCGACC-TTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 | | |||| ||| || | || ||||| | | ||| | |||| |||||| Sbjct 3210871 GCTTCAAGACCCTTGAGC-GTTCGTACCTCCTCCGCATCGGCGGCAAGGTCGCCGAGCGT 3210813 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 |||||| | ||| | ||||||||| | | || ||| | ||| ||| || Sbjct 3210812 CCCCAGCACATGATTATGCGTGTCTCGATCGG----TAT--------CCACGGCGAGAAC 3210765 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCG 259921 | || | || | | |||||| | ||||||| ||| | || ||| || Sbjct 3210764 A---TTGAAAAGGTCATTGAGACCTACAACCTCATGTCGGAGCGTTACTTTACCCACGCC 3210708 Query 259922 ACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTG 259981 |||| || ||||| || ||||| || || | ||| |||| ||||||||||| || | Sbjct 3210707 TCGCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTC 3210648 Query 259982 GACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATC 260041 | |||||||| ||| || || || |||||||| ||||| |||||| ||||| | ||| Sbjct 3210647 GCCATGAAGGACGACTCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATC 3210588 Query 260042 TCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||| | |||||||| |||||| | || || ||||| | || ||| |||| | | Sbjct 3210587 TCCAAGACTGCCGGCGGTATCGGTCT--CCACATCCACAACATTCGTGCCAAGGGCTCGT 3210530 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||||||| | || ||||| | || |||||||| || | | ||| Sbjct 3210529 ACATTGCCGGCACCAACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACG 3210470 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 || || || |||||||||||| Sbjct 3210469 CTACTGCTCGTTACGTCGACCAG 3210447 Score = 143 bits (158), Expect = 4e-28 Identities = 179/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||| ||||||||||| |||||| || | | ||| Sbjct 2871397 TACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 2871344 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||| | ||| | |||||||| ||| ||||| |||| || |||| | Sbjct 2871343 TCCAACAAGGCCATGGCCATCCTCAACTCGTTCGTCTCGGACATTTTCGAGCGTATCGCC 2871284 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || ||| | |||| | ||| || ||| ||||||||||| Sbjct 2871283 ACCGAGGCCTCCAAGCTCGCGTCGTACAACCACCGCTCGACCATCTCGTCGCGCGAGATC 2871224 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| ||||| ||| | | ||| || || | | ||||||| |||| |||||| Sbjct 2871223 CAGACTGCCGTCCGCCTCATCCTCCCCGGAGAGCTCTCGAAGCACGCCATCTCTGAGGGC 2871164 Query 725139 ACCA 725142 |||| Sbjct 2871163 ACCA 2871160 Score = 123 bits (136), Expect = 4e-22 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATATGGCG 263235 ||||| | ||| |||||| || |||||| | | ||| || | | ||||| | || Sbjct 3209281 TCAAGTCCATCTACAAGACTGTCTGGGAGATTTCGCAAAAGGCCGTC-ATTGACCTTGCC 3209223 Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295 |||||||| | ||| |||||||| |||||||||||| | |||| ||| ||||| Sbjct 3209222 GCCGACCGTGGAGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACCTTGCCAACCCG 3209163 Query 263296 ACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGG 263354 || | | ||| |||| ||||||||| || | ||| ||||| ||||||||||| Sbjct 3209162 TCGTTCTCGCAGC-TCACTTCGATGCACTTTTACGGCTGGAAGCGCGGACTCAAGACTGG 3209104 Query 263355 CATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 || ||||| || |||||||| || | ||||||||||| || ||||||||||| Sbjct 3209103 TATCTACTACCTCCGCACCCGCCCTTCGGCCAACGCCATCCAGTTCACCGTCGA 3209050 Score = 111 bits (122), Expect = 2e-18 Identities = 307/474 (65%), Gaps = 12/474 (3%) Strand=Plus/Minus Query 261796 CAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTCATCAACTG 261855 ||||||| || ||||||||| |||||| || || ||||||||||| || || ||| Sbjct 3210438 CAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGATGTCTTCGACTT 3210379 Query 261856 GCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTT 261915 || |||||| |||||||||||||| ||||| || |||| || || ||||| Sbjct 3210378 CCTCGACCTCCGCAAGAACCACGGCAA-GGAGGAGG-----TTCGCGCCCGTGACCTCTT 3210325 Query 261916 TTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGCGACTGGTC 261975 |||| ||| |||| | ||||| || ||| | || | | | | | | | |||||| | Sbjct 3210324 CTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTGACGGTGACTGGAC 3210265 Query 261976 GCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCCTTTGACGC 262035 ||| | ||||| |||| |||||||| ||| | | | || ||||| || Sbjct 3210264 CCTCATGTGCCCCGCCGAATGCCCCGGCCTCTCCGACGTCCACTCTGAGGAGTTTGAGGC 3210205 Query 262036 CCTCTATG--AGNNNNNNNNNNNNNNNNNNNNNNCGC-GGACCGTCGTGCCCGCACGACA 262092 ||||| | | ||| ||| || | || | | Sbjct 3210204 TCTCTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACTATCAAG---GCTCAGAA 3210148 Query 262093 GATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAA 262152 | |||||| |||||| ||| |||||| | ||||| || |||| |||| ||||||| Sbjct 3210147 GCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGCCCCTTCATGCTCTACAA 3210088 Query 262153 GGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACCT 262212 |||||| | ||||| | |||||||||| |||| ||||||| | | ||||||| Sbjct 3210087 GGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAACCT 3210028 Query 262213 GTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 ||||| ||||| || ||| || | ||| ||||| || |||||||| Sbjct 3210027 CTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCCGTCTGCAACCT 3209974 >seq2 Length=4873547 Score = 116 bits (128), Expect = 5e-20 Identities = 120/153 (78%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 1456607 CATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAG 1456666 ||||||||||||||| ||||| ||||| |||||||| ||| |||||||||| | | Sbjct 436541 CATGTGCCAGTACATGGAATTC-GTCGCGGACCGCCTCGTCGTCGCGCTCGGCTACAGCA 436483 Query 1456667 AAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAG 1456726 || ||||| |||||||||| ||| ||||||||| | |||||||| |||||||| Sbjct 436482 AAAT-CTACCACGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAG 436424 Query 1456727 ACCAACTTTTTCGAGCGCCGCGT-GGCGAGTAC 1456758 |||||||||||||| ||||| ||| |||| Sbjct 436423 GCCAACTTTTTCGAGTCGCGCGTCAGCGCGTAC 436391 >seq6 Length=833729 Score = 93.3 bits (102), Expect = 6e-13 Identities = 198/293 (68%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 2133515 CCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGT 2133574 ||| || |||| || || |||| | |||| ||||| ||||||||||| | || Sbjct 507217 CCTTGCGGACGTGATCAACGACGCCGTGTTTGCCGAGGACCACGACGAGATGGTCATTGT 507158 Query 2133575 GCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGC 2133634 |||||| |||||| | | ||| |||||||||||||| || |||| || | ||||||| Sbjct 507157 GCGCGACATTGACGTCTACTCGCTGTGCGAGCACCACATGGTGCCGTTCACCGGCAAGAT 507098 Query 2133635 CCACGTGGGCTACCTGCCCGCGGGCAAGATC---ATCGGTCTGAGCAAGATCCCGCGCAT 2133691 | | |||||| | | | |||| || |||| ||| |||| || ||||||| Sbjct 507097 CTCGATTGGCTACATTC---CAAACAAGCTCGTGCTCGGCCTGTCCAAGCTCGCGCGCAT 507041 Query 2133692 CGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGC--- 2133748 || ||| | |||| | ||| |||| || |||||| ||||| ||| |||| Sbjct 507040 CGCCGAGACGTTTGCGCGCCGTCTCCAGGTCCAGGAGCGCCTCACCAAGCAGGTCGCCCT 506981 Query 2133749 CGAGAGCGTGAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGG 2133801 || || | || ||| | || | |||||||||| |||||| | |||| Sbjct 506980 CGCGATCATG---GAGGCGATCCGCCCCCGCGGCGTCGCGGTCGTCATGGAGG 506931 >seq1 Length=5948321 Score = 89.7 bits (98), Expect = 7e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1818059 GAGGTCGCCCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTC 1818118 ||||| | | ||| | | ||||| ||||||||||| | ||||| || || |||| Sbjct 1154285 GAGGTGGACAATGTTGTACGGCGTGACGCGCTCGGGGTACGTGAGGATCATGGCGATACT 1154226 Query 1818119 ATAGGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGC 1818178 ||||| || |||| ||| | | ||| | |||||| | ||||||| || || Sbjct 1154225 GCGCGGCACACCGACCTGGTCGAGCTGAATGTTGGGGTCACCAGTAATGACGGTACGGGC 1154166 Query 1818179 GGTAAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGA 1818237 | ||||| ||| |||||||||||| || || |||| | ||||||||||||||||| Sbjct 1154165 CGAAAAGTCGACACGCTTGCCCATGAGGTTACCACGGAGACGGCCCTCCTTGCCCTTGA 1154107 Score = 87.8 bits (96), Expect = 3e-11 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 1816067 AACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCGCGCTTGATCTGCAGGCTC 1816126 ||||||| || || ||||| | |||||| || ||| || || || ||| | Sbjct 1155755 AACTGGATGATATCACCGTTCGAGTTGCGAACAGTGCCATCGTAGCCGACCTTGAGGTCC 1155696 Query 1816127 TCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGT 1816185 ||||| | ||||| | |||||||||||||| ||| ||| |||| ||||||||||| || Sbjct 1155695 TCCATGGCCTTGACGAGTCGGCGCTGGATGTATCCA-GTCTCGGCCGTCTTGACGGCGGT 1155637 Query 1816186 GTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCC 1816245 |||| || ||||| || || || || ||| || || | ||| ||| | ||||| Sbjct 1155636 ATCGATAAGACCCTCACGACCACCCATGGCGTGGAAGAAGAACTCTTGCGGTGTAAGGCC 1155577 Query 1816246 GCGCTCGTACGAGTT 1816260 ||| ||||||||| Sbjct 1155576 ACGCAGGTACGAGTT 1155562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809560318754