Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 >seq4 Length=4180124 Score = 109 bits (120), Expect = 5e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| |||||| || | || || |||||||| || ||||| Sbjct 23222 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCGAGCTGCTTGCCAGCAAA 23163 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || |||||||||| |||| || || | | || Sbjct 23162 GATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC-TTCGCCTTAACGT 23104 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| ||| || ||||||| ||||| || || || || Sbjct 23103 TGTCGATAGTGTCGGACGACTCGACCTCCAGAGTGATGGTCTTTCCAGT 23055 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || | || || |||||||| || || || Sbjct 22720 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 22661 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| || |||||||||| |||||| ||| | || Sbjct 22660 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 22602 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | || || || || || || | ||| || | Sbjct 22601 TGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGA 22542 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 22541 CGAAGATCTGCAT 22529 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || || || Sbjct 22948 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAA 22889 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| ||||| ||| | || Sbjct 22888 AATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGT 22830 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || |||||||| || || | Sbjct 22829 TGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTGA 22770 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 22769 CGAAGATCTGCAT 22757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793504206360