Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 >seq4 Length=4180124 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||||||| Sbjct 22755 CCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 22696 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || || || | ||||||||| ||||| || Sbjct 22695 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 22636 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 22635 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 22576 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| || ||||| | ||| || ||||| || ||||| Sbjct 22575 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || ||||||||||| | |||| | ||| || Sbjct 22965 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCA 22906 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || ||||| | ||||||||| || || || ||||| || || || ||| Sbjct 22905 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 22846 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || || || || ||||| ||||| || Sbjct 22845 ATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTG 22786 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| Sbjct 22785 CCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| ||||| || ||||| || |||||||||||| Sbjct 23257 CCACCACGGAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 23198 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| ||||| |||| |||||||| || || || Sbjct 23197 AAGGTACGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 23138 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||||||||| || || Sbjct 23137 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGACC 23078 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||||| || || || Sbjct 23077 TCCAGAGTGATGGTCTTTCCAGT 23055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398292602840