Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 208 1e-48 seq4 114 2e-20 seq1 96.9 4e-15 seq2 93.3 5e-14 >seq5 Length=3690501 Score = 208 bits (230), Expect = 1e-48 Identities = 1099/1739 (63%), Gaps = 33/1739 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| ||||| || || ||||||||||| | ||||| |||| | ||||| |||| | Sbjct 3209089 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTG 3209148 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 |||| || | || || | | | | | ||| | ||| |||| |||| |||| Sbjct 3209149 AGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACT--GGTCGATGA 3209206 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540 || || || | || || | |||||||| |||| | ||| ||||| || || Sbjct 3209207 AGGCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCT 3209266 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 |||| |||||| || || ||||| | | || | |||||||||||| |||| Sbjct 3209267 TGTAGATGGACTTGATGTCCTCGGGGATTCCGGGAATGTGCTGGATGGAACCACCCGAGG 3209326 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | | ||| | |||||| || | | ||||||||||| || |||||||| || || Sbjct 3209327 CAATGACGAGCTGCTTCATGTCATCGTCCCAGAGACCAAGGTTGATGAGGTCACGGAGGA 3209386 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | | ||| | || ||||| | |||| | | | ||||| | | | Sbjct 3209387 GCCAGGGGCAGACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATCGAGG 3209446 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 |||| || |||||||| || || || | || || | ||| ||||| || ||||| | Sbjct 3209447 TGTAGGGCTCAAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGCATGG 3209506 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840 | || | | ||| ||| || | ||| | || || | ||| | |||| Sbjct 3209507 GGGCAACAAGAAGCGAGTTGCGGACACCGTGCTGGGCAATCTTCTGGCGGAGCTCGTCCC 3209566 Query 110841 AGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 ||| || | ||| | | |||| | ||||||||||||| || || || Sbjct 3209567 AGTTCCAGAGGTCGGTGGGGACGCGGCCCCAGAGGTCAAACTGAAGCTTGCCCTGCGAAA 3209626 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCT 110960 ||| || ||||| | | || || | | | |||| || || || || Sbjct 3209627 TGGGCGAGCCCTCGTACGAGGGGTACTTGCCAAGTTCGACGGCCATCTCGCACGACGACT 3209686 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATAC-GAGCATTCATCTCCTTGGCTTCATCT 111019 | |||| ||||| || ||||| |||||||| ||| || | ||| || | Sbjct 3209687 CGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTTGAGG-TTGAGCTCACGAGCAGCGGGC 3209745 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || ||||| | |||| || || | || || ||||| || ||||| | ||| Sbjct 3209746 GAGTCAAAGGGCATGCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCG 3209805 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA---CGGGATAAAAATTTCTG 111136 | || | ||| ||||| || || || || ||||| |||| || | || | Sbjct 3209806 ACGGGGCGGTGGCGCATGTTCGAGTTCTTGGC---CTCAATGACGGGGTAGTAGTTGCGC 3209862 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 ||||| | || || || ||||| |||| ||| || || || || || || | | | Sbjct 3209863 GAGATGACGCAGTCGAGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTCTTAAAG 3209922 Query 111197 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 || | |||| |||| | |||| | || ||||| || || || | ||||| Sbjct 3209923 TCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCAG 3209982 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 || || ||| || | | |||||| | ||| || || || | |||||| ||| Sbjct 3209983 ACGGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGACGACTTG 3210042 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | | || ||||| ||| |||| || ||||||||||||||| || Sbjct 3210043 ATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAG 3210102 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGG-TA 111434 || || ||||| ||||| | | |||||| || ||| | | || | | || | || Sbjct 3210103 GGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCCTTGATA 3210162 Query 111435 CAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | ||| |||| | ||||| |||||||||| |||||| || |||||||||||| Sbjct 3210163 GTCTTGCG---GCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTCCTCA 3210219 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACC 111552 |||||||||| || || || || | | || || | || | ||| | ||| | Sbjct 3210220 GAGTGGACGTCGGAGAGGCC-GGGGCATTCGGCGGGGCACATGAGGGTCCAGTCACCGTC 3210278 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 |||| || ||| ||||||| ||||| | ||||| |||| | ||||| || | Sbjct 3210279 AGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCACGGGC 3210338 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 ||| |||| || | || ||||| || | || ||||| || | || ||| ||||| Sbjct 3210339 GCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCGGCGTG 3210398 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCC------CTTTCGACGCCCAGCTTGATTTAC 111726 ||| ||||| || |||| || | | || ||| | ||| | || | || Sbjct 3210399 CCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTA---CCACCCTGGTCGAC 3210455 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 || || || || |||| | | || ||||| || | ||||| | || | || || Sbjct 3210456 GTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGTT 3210515 Query 111787 TGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || |||||| ||||| | | | |||||||| | || ||||| Sbjct 3210516 GGTGCCGGCAATGTACGAG--CCCTTGGCACGAATGTTGTGGATGTGGAGACCGATACCG 3210573 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 || || ||| ||||| || || || | | ||||| | ||||| |||| || ||| Sbjct 3210574 CCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAGAG 3210633 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| |||||| |||||||| |||||||| || || ||||| || ||| Sbjct 3210634 TCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTTG 3210693 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 112024 |||||||| || | ||||| | || || | ||||| || ||| ||||| | | Sbjct 3210694 AAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAATG 3210753 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||||| || |||||||| ||||| | ||| ||||| | ||||| ||| || Sbjct 3210754 ACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATGTGCTGGGG 3210812 >seq4 Length=4180124 Score = 114 bits (126), Expect = 2e-20 Identities = 237/346 (68%), Gaps = 5/346 (1%) Strand=Plus/Plus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| ||||| || | ||| |||||||||||| | |||| || |||||| || || Sbjct 54689 GAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAAT 54748 Query 122541 GAGGTTACATGGGA-GTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| ||| |||| | || || || |||| | | |||||||| || ||||| || | Sbjct 54749 GAGCG-ACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGA 54807 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCCACG 122658 ||| || || |||| ||| | | || | || | ||||||| | Sbjct 54808 TGATCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAG-GTGTGTGAAGAGGAGACAG 54866 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || || || || || || || |||||| || || Sbjct 54867 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCG 54926 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | | ||| || || |||||||||||| Sbjct 54927 GGCATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATA 54986 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG 122824 ||||| || ||||| |||| ||||| || ||||| || |||| Sbjct 54987 CCCTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA-CGAG 55031 >seq1 Length=5948321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| || | |||| || || || || | | ||| | | || ||| Sbjct 2247874 GCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGTGGCGAACAGA 2247933 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || | || ||| ||||| ||||||||||||||||| | | | ||| || Sbjct 2247934 TCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGAACCGGAG-AC 2247992 Query 11750 TG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || || ||| ||||| || | ||||| ||| |||| ||| || || ||||| || || Sbjct 2247993 TGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGTCTTACCGGT 2248052 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| || ||| | ||||| ||| || ||||| ||||||||||| Sbjct 2248053 ACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 >seq2 Length=4873547 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||| || || || || || || ||||| ||| ||||| Sbjct 436714 GCAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGTTTGAAAAGGTCAGACCC 436773 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 |||| || || |||||||| | ||| |||| || ||| || || ||||| |||||||| Sbjct 436774 CGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCA-AACGAGCCGGAAAAGAAGAT 436832 Query 122778 ACCCTCCACACACGCAAACGCAA 122800 ||||| |||||||||||||||| Sbjct 436833 GCCCTCGACACACGCAAACGCAA 436855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200