Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 302 6e-77 seq4 134 2e-26 seq2 132 6e-26 seq1 98.7 1e-15 >seq5 Length=3690501 Score = 302 bits (334), Expect = 6e-77 Identities = 1123/1740 (65%), Gaps = 35/1740 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| || || |||||||| || |||||||| | || | ||||| || | Sbjct 3209089 CGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATCGAAGTG 3209148 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || |||| | || | | | | | ||| | || || || ||||||||| Sbjct 3209149 AGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACTGGTCGATGAAG 3209208 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 ||| || || || || | ||||| || |||| | || ||||| |||||| || Sbjct 3209209 GCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACAGTCTTG 3209268 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGA-TATTTTGGATGGATCCACCCG---C 118072 |||| | ||| || || || ||||| ||| || | | |||||||| ||||||| | Sbjct 3209269 TAGATGGACTTGATGTCCTCGGGGAT-TCCGGGAATGTGCTGGATGGAACCACCCGAGGC 3209327 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 |||| ||| | |||||| || | ||||||||||| || |||| || | Sbjct 3209328 AATGAC---GAGCTGCTTCATGTCATCGTCCCAGAGACCAAGGTTGATGAGGTCACGGAG 3209384 Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 ||| | | | ||| || || ||||||| |||| || | | |||| | Sbjct 3209385 GAGCCAGGGGCA--GACGACCTGGAAGTCACCCGAGAGGACACGACGCGAGTAGAGCATC 3209442 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| |||||||||||||| || || | || || | || ||||| |||||| Sbjct 3209443 GAGGTGTAGGGCTCAAAGCACTCGTTCCAGCCGAGAATCTGCGAGGTCGAGGCAGTGGGC 3209502 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | ||||| ||| |||| ||| | | ||| | ||| || Sbjct 3209503 ATGGGGGCAACAAGAAGCGAGTTGCGGACACCGTGCTGGGCAATCTTCTGGCGGAGCTCG 3209562 Query 118311 TCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| | || | | | | | || ||| | |||||||| || | || | Sbjct 3209563 TCCCAGTTCCAGAGGTCGGTGGGGACGCGGCC--CCAGAGGTCAAACTGAAGCTTGCCCT 3209620 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 | || ||||| ||||| | | || ||| | | |||| ||| | Sbjct 3209621 GCGAAATGGGCGAGCCCTCGTACGAGGGGTACTTGCCAAGTTCGACGGCCATCTCGCACG 3209680 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGC-GAGCATTCATTGCCTTGGCC 118487 || ||||||||| ||||| || || || ||||| || ||| || | | || Sbjct 3209681 ACGACTCGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTTGAGG-TTGAGCTCACGAGCA 3209739 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 || || ||||| | | ||| || || | || || ||||| ||||||||| Sbjct 3209740 GCGGGCGAGTCAAAGGGCATGCGGAGAGCCATGAAGGCGTCGGCAAGACCCTGGACACCG 3209799 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA---CGGGATAAAAA 118604 || || | ||||| || | ||| || || ||| || ||| | |||| || | Sbjct 3209800 AGACCGACGGGGCGGTGGCGCATGTTCGAGTTCTTGGC---CTCAATGACGGGGTAGTAG 3209856 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || | ||| || | | || || |||||||||||||| || || || || ||||| Sbjct 3209857 TTGCGCGAGATGACGCAGTCGAGGTTCTTGGTGACAACCTTGGTAATCTCGTGGAGCTTC 3209916 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | | || | ||| |||| | |||| | ||| ||||| || || || || Sbjct 3209917 TTAAAGTCGTAGGTGCCGTTCTCAAAGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGG 3209976 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || || || | ||| || ||| |||||| ||||| || ||||| | ||| || Sbjct 3209977 TTGCAGACGGCAACCTCGTCGGGGGCAGAGTACTCGATAATCTCAGTGCAGAGGTTGGAC 3210036 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 ||| |||||||| | || || || || ||||| ||| || |||||||| ||| Sbjct 3210037 GACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGC 3210096 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGC 118903 ||| | || || ||||| || |||| || |||||| || ||||| | || | | Sbjct 3210097 ATGAAGGGGCCACCAGTCTCAGTCTGGGCCTCGAGAATGGCAAACCAGAGCTTCTGAGCC 3210156 Query 118904 TGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 118963 | | | ||| | | | ||||| |||||||||| |||||| || |||||||| Sbjct 3210157 TTG-ATAGTCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTAGAGAGCCTCAAACTC 3210215 Query 118964 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT-CTGGGCAGAAGAGAGACCATTGAC 119022 ||| | | || ||||| || || || || | ||||| | ||| | ||| | || Sbjct 3210216 CTCAGAGTGGACGTCGGAGAGGCCGGG-GCATTCGGCGGGGCACATGAGGGTCCAGTCAC 3210274 Query 119023 CACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCC 119082 | | |||| || ||| ||||||||||||| | ||||||||| || ||||||| || | Sbjct 3210275 CGTCAGCCTCGACACGCCTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAAGAGGTCAC 3210334 Query 119083 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 119142 | |||| | || || | || || || || | || | ||||| | || ||| | Sbjct 3210335 GGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACATCGG 3210394 Query 119143 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---ACCAGCCTGGTTTA 119199 ||||||| || || ||||| | || | | || || |||| |||||| | Sbjct 3210395 CGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGA 3210454 Query 119200 CATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCAT 119259 | || | ||||| |||| | |||| ||||| || | |||||| | || | ||| | Sbjct 3210455 CGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATGGGGACGATACCGTTAGAGTAGCCGT 3210514 Query 119260 TTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACC 119317 | || || ||| ||||| | | |||| | | | ||||||||| | ||| ||||| Sbjct 3210515 TGGTGCCGGCAATGTACGAGCCCT--TGGCACGAATGTTGTGGATGTGGAGACCGATACC 3210572 Query 119318 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 119377 || || ||| ||||| || ||||| | ||||| || ||||||| || || || || Sbjct 3210573 GCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCAATAGA 3210632 Query 119378 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTT 119437 ||| |||| | |||| ||||||||| |||||| || || ||| ||||| ||||| Sbjct 3210633 GTCGTCCTTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTGGGGGGTACCGGCGTT 3210692 Query 119438 GAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAA 119497 |||||| || || | |||||| | || || | ||||| || ||||||||| | Sbjct 3210693 GAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCAAT 3210752 Query 119498 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||| ||||| || ||||| |||||||||||||| ||||||| ||||| ||||| Sbjct 3210753 GACCTTTTCAATGTTCTCGCCGTGGATACCGATCGAGACACGCATAATCATGTGCTGGGG 3210812 >seq4 Length=4180124 Score = 134 bits (148), Expect = 2e-26 Identities = 310/459 (68%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 129721 CTTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 129780 |||| | ||| || || ||| |||||||||||| | ||| || | | ||| | Sbjct 54572 CTTGGCGTAGGCCGAGACTCGCGACTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCAT 54631 Query 129781 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGA 129839 ||||||||| || || ||||| | ||||| | || | || | ||| | || Sbjct 54632 CTCCATAAAGTCGAAGGGGTTGGTAGAGTTGTACATCTTCTCGTT-TCCGAGGGCGACGA 54690 Query 129840 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA 129899 | ||||| || | ||| |||||||||||| |||| | |||||| || |||| Sbjct 54691 GCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGGGTAGCGTTCATGCCAATGA 54750 Query 129900 GGTTACATGGGA-GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 | ||| |||| | || || || |||| ||| |||||| | ||||| ||| | | Sbjct 54751 GCG-ACACGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACAGCCTCCTTGATG 54809 Query 129959 ATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGC 130017 || || |||| || | | || | | ||| | || | ||||||| ||| Sbjct 54810 ATCTTGTCAATGAGGTCGGGGTGGGGACGACGGCGGAG-GTGTGTGAAGAGGAGACAGGC 54868 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || |||||||||||||||||| |||||||| || || |||||| || || || Sbjct 54869 AAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGG 54928 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| |||| || || || ||||||||||| || Sbjct 54929 CATGAGTCCACGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCCGAGAAGAAGATACC 54988 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||| || || || |||| ||| |||||||| || || Sbjct 54989 CTCAACGGCAGCAAAGGCAATGAGGCGCTCAGCGAAAGA 55027 >seq2 Length=4873547 Score = 132 bits (146), Expect = 6e-26 Identities = 251/359 (70%), Gaps = 19/359 (5%) Strand=Plus/Plus Query 129886 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 129945 ||| || ||||| || ||| |||||||| ||| || ||| |||| ||||| || || Sbjct 436584 GTTGATGCCGATCAGCGCACAGGGGAGCGCATCCGTGAGAAACTCCTTTTCAATCTCGAC 436643 Query 129946 AGCTTCCCGCACGATGGCGTGAA--TGGTC-TCCGTGCCAGGTCTATTGCGCAAA--GTC 130000 || || || | ||| ||| | | ||| |||| || | || ||||| | | | Sbjct 436644 CGCCTCGCGGATAATGTTGTGCACCTCGTCCTCCGAGCACCG---ATGGCGCAGATGGCC 436700 Query 130001 TTGAAG--AGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCAT 130058 | || || |||| |||| || ||| | |||||||| || |||||||| || | Sbjct 436701 ATACAGCAAG---CACG-CAAAGTCGGTGTGCATGCCCTCGTCGCGCGAGATGAGCTCGT 436756 Query 130059 TCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATG 130118 | || ||| |||||| |||| || || |||||||| | |||||||||||| ||| | Sbjct 436757 TTGAAAAGGTCAGACCCCGCATAAGCCCGCGCTTCTTGAGCCAGAAAATCGCCGCAAACG 436816 Query 130119 AGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178 |||| || |||||||| ||||| |||||||| ||||||| |||||| || ||| | Sbjct 436817 AGCCGGAAAAGAAGATGCCCTCGACACACGCAAACGCAATCAGACGC-GTGC---GGAAC 436872 Query 130179 GGGACTTTGT-ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 || | | || || | |||| |||||| | ||||||||| |||||||||||| Sbjct 436873 GGCATCTCGTCGGTAATGTATTTCAGCGCCCAGTCGGCCTTTTTCCGGATACACGGGAC 436931 >seq1 Length=5948321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAAC 14292 ||| |||| ||| ||||| || |||| || | ||| || || || | | |||| Sbjct 2247864 CTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGT 2247923 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | || | ||| || || | | || ||||||||| ||||||||||||||||| | || Sbjct 2247924 GGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGA 2247983 Query 14353 GGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 14412 |||| | || ||||||||| || | ||||| ||| |||| ||| || || || Sbjct 2247984 ACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGT 2248043 Query 14413 CTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 ||| || || || || || | ||||| |||||| || || ||| ||||||| Sbjct 2248044 CTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435068582520