Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 183 4e-41 seq4 141 1e-28 seq1 120 4e-22 seq2 105 8e-18 >seq5 Length=3690501 Score = 183 bits (202), Expect = 4e-41 Identities = 680/1054 (65%), Gaps = 25/1054 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || | |||||||| || || || ||||||| ||| Sbjct 3210812 CCCCAGCACATGATTATGCGTGTCTCGATCGGTATCCACGGCGAGAACATTGAAAAGGTC 3210753 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||| | || || | ||||| | || ||||||||| Sbjct 3210752 ATTGAGACCTACAACCTCATGTCGGAGCGTTACTTTACCCACGCCTCGCCTACCCTCTTC 3210693 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || ||||| ||||| |||||||| |||||| ||||| ||| Sbjct 3210692 AACGCCGGTACCCCCCACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAAGGACGAC 3210633 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || |||| ||||| | ||||| | | || || || ||||| ||| || || Sbjct 3210632 TCTATTGACGGCATCTACGACACTCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGC 3210573 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACAA 104519 ||||| || | |||||||| | | | |||| | ||||| ||| || || | Sbjct 3210572 GGTATCGGTCTCCACATCCACAACATTCGTGCCA--AGGGCTCGTACATTGCCGGCACCA 3210515 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || | || | ||||| | || ||||| || | | |||| || || || || | Sbjct 3210514 ACGGCTACTCTAACGGTATCGTCCCCATGCTCCGTGCCTACGACGCTACTGCTCGTTACG 3210455 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||| | || | | || |||| || ||||| |||| Sbjct 3210454 TCGACCAGGGTGGTAACAAGCGCC---CCGGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3210398 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | || ||||| || | || ||||| || | ||||||| || Sbjct 3210397 ACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 3210338 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || ||||||| ||| |||||||| | || |||||||||| | | || |||| Sbjct 3210337 CCCGTGACCTCTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAGGCGTGTCGAGGCTG 3210278 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 || | ||| | ||| | || || | | || || || || |||||||| | | | Sbjct 3210277 ACGGTGACTGGACCCTCATGTGCCCCGCCGAATGC-CCCGGCCTCTCCGACGTCCACTCT 3210219 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG-TCGGGCGACTGCGACGGT 104871 ||||||||||| || || ||| |||||||||| || || |||| | ||| | Sbjct 3210218 GAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGC-AAGACTAT 3210160 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | | ||| || |||||| || | || || ||||||||| || | Sbjct 3210159 -CAAGGCTCAGAAGCTCTGGTTTGCCATTCTCGAGGCCCAGACTGAGACTGGTGGCCCCT 3210101 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| ||||| ||||| |||| ||| || || || | | || |||| Sbjct 3210100 TCATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGCAGCACCTCGGCACCATCA 3210041 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| ||||| || || || | || | | | | || ||| || || | Sbjct 3210040 AGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCTGCCCCCGACGAGGTTGCCGTCT 3209981 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | ||||| || || || || ||||| | ||| || |||| || | || | Sbjct 3209980 GCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACTTTGAGAACGGCACCTACGACT 3209921 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | || |||||||| |||| || ||||||||| ||||| || | || || Sbjct 3209920 TTAAGAAGCTCCACGAGATTACCAAGGTTGTCACCAAGAACCTCGACTGCGTCATCTCGC 3209861 Query 105171 GAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | ||||||| ||||| || || || || ||| | ||||| || | | Sbjct 3209860 GCAACTACTACCCCGTCATTGAG---GCCAAGAACTCGAACATGCGCCACCGCCCCGTCG 3209804 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||||||||| |||||||| || || | ||||| Sbjct 3209803 GTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 3209770 >seq4 Length=4180124 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||||| ||| | || ||||| |||||||||||||||||||| || || Sbjct 55027 TCTTTCGCTGAGCGCCTCATTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCGGGATCG 54968 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||| | | || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 54967 TTCGCCTCGATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGACTCACCTTCTCCAAC 54908 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| |||||| || ||||| Sbjct 54907 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 54867 >seq1 Length=5948321 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 |||||| | |||||||||||| || | |||| |||||| || || | | || Sbjct 2247864 CTTTCCGATGGCATCAATCTCGTCGACAAAGATGATGCAGGGAGCGTTCTTCCTGGCAGT 2247923 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || ||||| || |||||| || || ||||| ||||||||||||||||| | | Sbjct 2247924 GGCGAACAGATCACGGACACGCGAGGGACCGACACCGACAAACATCTCCACAAACTCGGA 2247983 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| | || ||||||||| || | ||||| || |||| ||| |||||||| Sbjct 2247984 ACCGGAGACTGAGAGGAAGGGGACCTTGGCCTCACCGGCGGTGGCCTTGGCAAGAAGAGT 2248043 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||| ||||| || ||| | ||| | |||||| || ||||||||||| || Sbjct 2248044 CTTACCGGTACCGGGGGGACCAGAGAGAATGGCACCGCGGGGAATCTTGGCACC 2248097 >seq2 Length=4873547 Score = 105 bits (116), Expect = 8e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 94874 || ||||||||||| ||||| |||||||| || || || || |||| | |||| ||||| Sbjct 436853 GCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTT-TGCGGCGATTTTCTGGCT 436795 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 ||||||||| || || |||| ||||| ||| || |||||||| ||||| || ||||| Sbjct 436794 CAAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGACGA 436735 Query 94935 GGGACTCCACCAAGAGTTTGCG 94956 ||| | ||| || |||||| Sbjct 436734 GGGCATGCACACCGACTTTGCG 436713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080