Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 138 3e-27 seq1 84.2 7e-11 >seq4 Length=4180124 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||| || ||||| || ||||| || || || Sbjct 22759 CATACCACCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTC 22700 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || ||||| ||||| ||||| || || Sbjct 22699 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGG 22640 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || || | || Sbjct 22639 AGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTC 22580 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| ||||| || || || || || |||||||| Sbjct 22579 GACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 22529 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| |||||||| ||||| || || || || || || Sbjct 22987 CATACCACCACGAAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 22928 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || ||||| || |||||||| || || ||||| ||||| || || Sbjct 22927 AGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGG 22868 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || || ||||| | || || | || Sbjct 22867 GGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCAATGGTGTCGGAAGACTC 22808 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||| || || | || || || || |||||||| Sbjct 22807 AACCTCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 22757 Score = 111 bits (122), Expect = 5e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||| ||||| || ||||| || || || || || || || Sbjct 23257 CCACCACGGAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 23198 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || ||||| || || || || ||||||||||| || || ||||| ||||| ||| Sbjct 23197 AAGGTACGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 23138 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || || || | || || | || || Sbjct 23137 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCGATAGTGTCGGACGACTCGACC 23078 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || | |||||||| || || Sbjct 23077 TCCAGAGTGATGGTCTTTCCAGTGAG 23052 >seq1 Length=5948321 Score = 84.2 bits (92), Expect = 7e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || || || || || || || || ||||| ||||| ||||| ||||| || || Sbjct 4244165 GTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATG 4244106 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || || || || || || || | || || | || || || Sbjct 4244105 CCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCG 4244046 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| ||||| || || || || ||||||||||| Sbjct 4244045 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 4244002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254069958651