Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 300 2e-76 seq2 170 2e-37 >seq5 Length=3690501 Score = 300 bits (332), Expect = 2e-76 Identities = 487/697 (70%), Gaps = 8/697 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||| |||| ||||| |||||||| ||||| ||||| ||||||||| Sbjct 3210722 TACTTTACCCACGCCTCGCCTACCCTCTTCAACGCCGGTACCCCCCACCCCCAGATGTCG 3210663 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||| || || |||||||| ||||| || |||||||||||||| || |||||| Sbjct 3210662 TCGTGCTTCCTCGTCGCCATGAAGGACGACTCTATTGACGGCATCTACGACACTCTCAAG 3210603 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 || ||||| ||||||||| | || ||||||||| ||||| | ||| | ||| Sbjct 3210602 ACCTGCGCCCAGATCTCCAAGACTGCCGGCGGTATCGGTCTCCACATCCACAACATTCGT 3210543 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || ||| | || || || |||||| | | | || ||||| || |||||| Sbjct 3210542 GCCAAGGGCTCGTACATTGCCGGCACCAACGGCTACTCTAACGGTATCGTCCCCATGCTC 3210483 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || | || | || || || || |||||| ||||||||||| |||||| || | Sbjct 3210482 CGTGCCTACGACGCTACTGCTCGTTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCC 3210423 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||||||||||||||| ||||||||||| | | || || ||||| || || | Sbjct 3210422 TTTGCCATCTACCTCGAGCCCTGGCACGCCGATGTCTTCGACTTCCTCGACCTCCGCAAG 3210363 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || || | || ||| | ||| ||||||||| || ||| || || ||||| |||| Sbjct 3210362 AACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTCTTCTAC-GCCCTCTGGATCTCGGA 3210304 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 |||||||||| || ||| |||| || ||| ||| |||||||| ||| || Sbjct 3210303 CCTCTTCATGAGGCGTGTCGAGGCTGACGGTGACTGGACCCTCATGTGCCCCGCCGAATG 3210244 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 |||||||||| | ||| || |||||||||| | | | || | ||||| Sbjct 3210243 CCCCGGCCTCTCCGACGTCCACTCTGAGGAGTTTGAGGCTCTCTACGAAAAGTACGAGCG 3210184 Query 53809 TCAGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAA 53865 | ||||| || ||||| | ||||||| | || | ||| ||| || ||| | Sbjct 3210183 TGAGGGCAAGGGCCGCAAGACTA---TCAAGGCTCAGAAGCTCTGGTTTGCCATTCTCGA 3210127 Query 53866 GAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 | |||| ||||| || || | |||| ||||||||| | | |||| ||| Sbjct 3210126 GGCCCAGACTGAGACTGGTGGCCCCTTCATGCTCTACAAGGACGCTGCCAACCGCAAGTC 3210067 Query 53926 CAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||| || || ||||| |||||| ||| |||| Sbjct 3210066 CAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAAC 3210030 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| || ||| ||| || ||||||||| | || ||| | |||||| | | Sbjct 3209281 TCAAGTCCATCTACAAGACTGTCTGGGAGATTTCGCAAAAGGCCGTCATTGACCTTGCCG 3209222 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| || | |||||||||||| ||||| || ||||| | | | || || | Sbjct 3209221 CCGACCGTGGAGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACCTTGCCAACCCGT 3209162 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | | || | | ||||||||||||||||| |||||| ||||||||||| |||| Sbjct 3209161 CGTTCTCGCAGCTCACTTCGATGCACTTTTACGGCTGGAAGCGCGGACTCAAGACTGGTA 3209102 Query 55908 TGTACTATCTGCGGACCCGCGCCAAGGCCAAGGC 55941 | ||||| || || |||||| | |||||| || Sbjct 3209101 TCTACTACCTCCGCACCCGCCCTTCGGCCAACGC 3209068 >seq2 Length=4873547 Score = 170 bits (188), Expect = 2e-37 Identities = 304/441 (69%), Gaps = 2/441 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| || || ||||| | ||||| ||| ||||| ||| | |||| || Sbjct 2022747 CCGGTACCAATACCATCGGCTCCATTGACCAGAACCATGGGCACTGTAGGGAGGTAGTAC 2022806 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | ||||| || | ||| ||||| | |||| ||| | Sbjct 2022807 TCTGGCTCGATGCGCTGGCCGTCCTCAACCAGGTAGTTGAGAATGGCATCGTCCGCCTTG 2022866 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| ||| | |||| | | | | |||||||||||||||| ||| || || Sbjct 2022867 TGGAAGATGGTGCGGGTCATGCGGGGAATGTTGGTGAAAATGTAACGAGCGCTAGCCGCG 2022926 Query 117332 TCCTTGCCA-CCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||| ||| || ||| | || ||||||||||| ||| | ||||| | || || | ||| Sbjct 2022927 TCCTTTCCACCCTGCATG-CGAGTACCGAATTGACCATTGGGCTCGAGAAGATTGATGTT 2022985 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 |||| ||||||||||| || || | | |||||| ||| | ||| ||| || Sbjct 2022986 GTTGCTTCCCACAAAGTTCTGGGCTAGGCCGACAATGGTAGAAGTCAAACTCTGCTCGCC 2023045 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||| || || || | ||| | ||||| || | |||||||| ||||| || ||| Sbjct 2023046 GTGGTGGTATGCAGTATTCTCGGATACGTAACCACCGAGCTGAGCGACCTTGATCTCTTT 2023105 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || || ||||| ||| || | || ||||||||||||| ||||||||||| || Sbjct 2023106 GCTGAGCTTGCGCTTGAAGCATGCGAAGATGACCTTGCGCTGACCAGGCTTCAGACCGTC 2023165 Query 117571 CGCCACGTGAGGGATCGAACG 117591 ||||| ||| || ||||| Sbjct 2023166 GGCCACCGAAGGAATGGAACG 2023186 Score = 145 bits (160), Expect = 8e-30 Identities = 296/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| || || || || || |||||||||| ||| ||||| ||||| ||| || Sbjct 2022747 CCGGTACCAATACCATCGGCTCCATTGACCAGAACCATGGGCACTGTAGGGAGGTAGTAC 2022806 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| || | || ||| || | || || || ||| ||| Sbjct 2022807 TCTGGCTCGATGCGCTGGCCGTCCTCAACCAGGTAGTTGAGAATGGCATCGTCCGCCTTG 2022866 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || || ||||| | | ||||| ||||| || | ||| ||||| Sbjct 2022867 TGGAAGATGGTGCGGGTCATGCGGGGAATGTTGGTGAAAATGTAACGAGCGCTAGCCGCG 2022926 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| ||||| || || || || || || ||| ||||||||| || |||| |||| Sbjct 2022927 TCCTTTCCACCCTGCATGCGAGTACCGAATTGACCATTGGGCTCGAGAAGATTGATGTTG 2022986 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||||| || ||||| || | ||||| || || |||| || ||| Sbjct 2022987 TTGCTTCCCACAAAGTTCTGGGCTAGGCCGACAATGGTAGAAGTCAAACTCTGCTCGCCG 2023046 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || || || | ||| | | ||| || | | ||| || ||||| || || | Sbjct 2023047 TGGTGGTATGCAGTATTCTCGGATACGTAACCACCGAGCTGAGCGACCTTGATCTCTTTG 2023106 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 | || || ||||| || ||| | || ||||||||||| || |||| |||||| Sbjct 2023107 CTGAGCTTGCGCTTGAAGCATGCGAAGATGACCTTGCGCTGACCAGGCTTCAGACCGTCG 2023166 Query 152296 ACCACGTGAGGAATCGAACG 152315 |||| |||||| ||||| Sbjct 2023167 GCCACCGAAGGAATGGAACG 2023186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215883716600