Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 304 1e-77 seq4 197 2e-45 seq2 136 5e-27 seq1 129 7e-25 >seq5 Length=3690501 Score = 304 bits (336), Expect = 1e-77 Identities = 697/1044 (67%), Gaps = 9/1044 (1%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| || || ||||| || |||| ||| |||||||||||| ||||||| Sbjct 3209769 CATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGGTGGCGCATGTTCGA 3209828 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || |||||| | ||||| |||| |||||||| || ||||| || Sbjct 3209829 GTTCTTGGCCTCAATGACGGGGTAGTAGTTGCGCGAGATGACGCAGTCGAGGTTCTTGGT 3209888 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT-TG--GTTCCCCT--TC-AC 80888 |||||| |||| || || || |||| ||||||| | || |||| | || || Sbjct 3209889 GACAACCTTGGTAATCTCGTGGAGCTTCTTAAAGTCGTAGGTGCCGTTCTCAAAGTCGAC 3209948 Query 80889 AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAA 80948 ||| || || ||| | || || || ||||| ||||| ||||| || | | | | Sbjct 3209949 AAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCAGAGTA 3210008 Query 80949 CTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGA 81008 ||||| || || ||||| | || || ||||| || || || |||| | |||||| || Sbjct 3210009 CTCGATAATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGA 3210068 Query 81009 CTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTT 81068 |||| |||| ||||||||||||| |||| | ||| ||| ||||| ||| | || Sbjct 3210069 CTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCAGTCTGGGCCTC 3210128 Query 81069 GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCAC 81128 ||| ||||| ||| | || | ||||||| ||||||| ||||| || | | Sbjct 3210129 GAGAATGGCAAACCAGAGCTTCTGAGCCTTGATAGTCTTGCGGCCCTTGCCCTCACGCTC 3210188 Query 81129 ATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 ||||| |||| | || |||| || ||| | || | |||| | ||||| || Sbjct 3210189 GTACTTTTCGTAGAGAGCCTCAAACTCCTCAGAGTGGACGTCGGAGAGGCCGGGGCATTC 3210248 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | |||||||| ||| |||||| ||| ||| ||| | ||||||| ||| | Sbjct 3210249 GGCGGGGCACATGAGGGTCCAGTCACCGTCAGCCTCGACACGCCTCATGAAGAGGTCCGA 3210308 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||||||| ||| ||||| ||| ||| ||||||| | || ||||| ||| Sbjct 3210309 GATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 3210368 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 | ||||| ||||| | || || || ||||| ||||| || || | ||| | | || Sbjct 3210369 GAGGTCGAGGAAGTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 3210428 Query 81369 CTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 ||| | |||||||||| ||||||||| ||||| |||| | |||| | ||| Sbjct 3210429 GGGGCGCTTGTTACCACCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCAT 3210488 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 |||| |||||| | || | ||||| || || | || ||| |||||||| || | Sbjct 3210489 GGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTACGAGCCCTTGGCACGAAT 3210548 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCAT 81545 ||| ||| |||||||| || || | ||| || ||||| || || || | Sbjct 3210549 GTTGTGGATGTGGAGACCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAG 3210608 Query 81546 GGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACAT 81605 || || || || || || || || | |||||| | | | ||| || ||||| Sbjct 3210609 AGTGTCGTAGATGCCGTCAATAGAGTCGTCCTTCATGGCGACGAGGAAGCACGACGACAT 3210668 Query 81606 CTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 ||| ||| | ||||| ||||| || || || | ||||| | || ||||| | Sbjct 3210669 CTGGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGCGAGGCGTGGGTAAAGTAACGCTC 3210728 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725 ||||| |||| ||||| || |||| | ||| | || ||||| |||||||| | Sbjct 3210729 CGACATGAGGTTGTAGGTCTCAATGACCTTTTCAATGTTCTCGCCGTGGATACCGATCGA 3210788 Query 81726 TACACGCATAAACATGTACTGGGG 81749 |||||||||| ||||| |||||| Sbjct 3210789 GACACGCATAATCATGTGCTGGGG 3210812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || || ||||| || || |||||||| || |||||||||||| | |||||| Sbjct 3209083 CGGGTGCGGAGGTAGTAGATACCAGTCTTGAGTCCGCGCTTCCAGCCGTAAAAGTGCATC 3209142 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 ||| |||||| || | | ||||| | | | ||||| || ||||| ||||| | Sbjct 3209143 GAAGTGAGCTGCGAGAACGACGGGTTGGCAAGGTGAATGTTGAGCGACTGCGACTGGTCG 3209202 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | ||||| | | |||||| | ||| ||||| || Sbjct 3209203 ATGAAGGCTCCACGGTCGGCGGCAAGGTCAATGACGGCCTTTTGCGAAATCTCCCAGACA 3209262 Query 80215 GT 80216 || Sbjct 3209263 GT 3209264 >seq4 Length=4180124 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || ||||||||||||||||| Sbjct 22757 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 22816 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || ||||||||||||||||| || || || |||||| Sbjct 22817 GACACCATTGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 22876 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 22877 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAAC 22936 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||||| || ||| | |||||||| ||||| Sbjct 22937 ATCCAGAAGGAGTCCACTCTTCACCTTGTCCTTCGTCTTCGTGGTGG 22983 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 22529 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCTTCG 22588 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| |||||||| |||||| Sbjct 22589 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 22648 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||||| || ||||| | ||||| || Sbjct 22649 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 22708 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || ||||| Sbjct 22709 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGTGG 22755 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||||| ||||| ||||| || | || | || | ||| Sbjct 23052 CTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGTCCGACACTATCGACAACGTTAAG 23111 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| ||||| || ||||||||||| || || |||||||| Sbjct 23112 GCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGC 23171 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||||| |||||| | | ||||| || |||| ||||| || || ||| Sbjct 23172 AAGCAGCTCGAGGATGGACGTACCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCTT 23231 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || ||| | ||||| || ||||| || Sbjct 23232 CACCTTGTCCTCCGTCTCCGTGGTGGCCA 23260 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || ||||| ||||| ||||| || | ||||| || | ||| Sbjct 22251 CTTACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 22310 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||||||||| || |||||||| |||||||||||||| || || || || Sbjct 22311 GCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGTCTCATCTTCGCCGGC 22370 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | || ||||| | ||||| Sbjct 22371 AAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTA 22405 >seq2 Length=4873547 Score = 136 bits (150), Expect = 5e-27 Identities = 267/390 (68%), Gaps = 6/390 (2%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| ||||| ||||| || |||||| ||||||||||| || | ||| Sbjct 2023186 CGTTCCATTCCTTCGGTGGCCGACGGTCTGAAGCCTGGTCAGCGCAAGGTCATCTTCGCA 2023127 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| || || | || || ||||| || ||||| || ||||| | Sbjct 2023126 TGCTTCAAGCGCAAGCTCAGCAAAGAGATCAAGGTCGCTCAGCTCGGTGGTTACGTATCC 2023067 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGC-ACCATTGTCAACCTTGC 32141 ||| | || || || ||||||||||| || | | | | ||||||||| ||| || Sbjct 2023066 GAGAATACTGCATACCACCACGGCGA-GCAGAGTTTGACTTCTACCATTGTCGGCCTAGC 2023008 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 ||||||||||| || || ||| | || | |||||||| ||| || || || || Sbjct 2023007 CCAGAACTTTGTGGGAAGCAACAACATCAATCTTCTCGAGCCCAATGGTCAATTCGGTAC 2022948 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--CGTCTCGCA 32259 || | ||||| ||||| || || ||| | |||||||| |||||| | | | | Sbjct 2022947 TCGCATGCAGGGTGGAAAGGACGCGGCTAGCGCTCGTTACATTTTCACCAACATTCCCCG 2022888 Query 32260 CCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGAT 32319 | | ||| |||| || ||| || | |||||||||| | ||||| ||| |||| Sbjct 2022887 CAT--GACCCGCACCATCTTCCACAAGGCGGACGATGCCATTCTCAACTACCTGGTTGAG 2022830 Query 32320 GACGGTCAGCGGGTCGAGCCGGTGTTCTAC 32349 ||||| ||||| ||||||| | || |||| Sbjct 2022829 GACGGCCAGCGCATCGAGCCAGAGTACTAC 2022800 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||||| || || || |||||||| || || || | ||||||||||| Sbjct 436853 GCGTTTGCGTGTGTCGAGGGCATCTTCTTTTCCGGCTCGTTTGCGGCGATTTTCTGGCTC 436794 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||||| || || |||| |||||| | ||||| |||||||| ||||| || |||||| Sbjct 436793 AAGAAGCGCGGGCTTATGCGGGGTCTGACCTTTTCAAACGAGCTCATCTCGCGCGACGAG 436734 Query 64846 GGGCTCCACCAAGAATTTGCG 64866 || | ||| || |||||| Sbjct 436733 GGCATGCACACCGACTTTGCG 436713 >seq1 Length=5948321 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 4244002 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 4244061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 4244062 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 4244121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||| || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 4244122 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 4244177 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| || || |||||||| || || || ||||| ||||| || | ||| | Sbjct 3541565 GTTAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGAC 3541624 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 3541625 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 3541684 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| |||||||| | || ||||| | ||||| Sbjct 3541685 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 3541728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310278809040