Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 >seq3 Length=4554691 Score = 116 bits (128), Expect = 3e-21 Identities = 234/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 ||||||||||||| || | | ||| ||||| | ||| || || ||| | ||| Sbjct 2526035 CCTTCGGGTTCCAAGCACTGAGCACAATCCTGCGGTCCGTGGGATTATTCTTAATCTTGT 2526094 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899 | ||||| | | ||||||||| | ||||| |||| ||| ||||| ||| || | Sbjct 2526095 CAATCACCTCCGCGAGCTGGTCCACGCCCTGCCCCGCATAATCCGCGTCGGCATCCTTGT 2526154 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 || | ||||| || || | ||||||||| ||||| || || ||||| |||||||| | Sbjct 2526155 ACGCTGCCCCGAAATGGCGCCACTGGAAGCCGTACACGGGCCCCAAATCGCCCTC--GCG 2526212 Query 6960 GAGATG--GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || | ||| |||||| ||| | || || ||||| || ||||||| || Sbjct 2526213 GCGGTGCCCCAGCCCGACCTTGTCGAGATACTCGCGGCTCCCGTTGCCGGCCCAGATGTT 2526272 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 ||| ||| || | ||||| | || |||| ||| || ||||| |||||||| Sbjct 2526273 CACGCCCTTGGCGGCGAGCTTGGCGCCGTCCGTGCATCCCGAGACAAACCAGAGCAGCTC 2526332 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||||| ||||| | | |||| | || || | ||||||||| Sbjct 2526333 CTCGATGACGCCGCGCGTGAACACCCTCTTGGTGGACAGCAGCGG 2526377 Score = 116 bits (128), Expect = 3e-21 Identities = 234/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||||||| | || || | |||| | | ||||| ||||||||||||| ||||| Sbjct 2526377 CCGCTGCTGTCCACCAAGAGGGTGTTCACGCGCGGCGTCATCGAGGAGCTGCTCTGGTTT 2526318 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || ||| |||| || | ||||| | || ||| ||||| ||||||| || Sbjct 2526317 GTCTCGGGATGCACGGACGGCGCCAAGCTCGCCGCCAAGGGCGTGAACATCTGGGCCGGC 2526258 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCC--CATCTCGGGAGGAGGGCGACT 34400 ||||| || || | ||| |||||| ||| | || | | | |||||||| | Sbjct 2526257 AACGGGAGCCGCGAGTATCTCGACAAGGTCGGGCTGGGGCACCGCCGC--GAGGGCGATT 2526200 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 |||| || || ||||| ||||||||| | || || ||||| | ||| || ||| | Sbjct 2526199 TGGGGCCCGTGTACGGCTTCCAGTGGCGCCATTTCGGGGCAGCGTACAAGGATGCCGACG 2526140 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 |||| ||| |||| ||||| | ||||||||| | | ||||| |||| | ||| | Sbjct 2526139 CGGATTATGCGGGGCAGGGCGTGGACCAGCTCGCGGAGGTGATTGACAAGATTAAGAATA 2526080 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 | || ||| | ||||| ||| | | || ||||||||||||| Sbjct 2526079 ATCCCACGGACCGCAGGATTGTGCTCAGTGCTTGGAACCCGAAGG 2526035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262304744240